(Q35447270)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

review article

1 reference

title

Advancing small-molecule-based chemical biology with next-generation sequencing technologies (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

author name string

Chandran Anandhakumar

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Seiichiro Kizaki

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Toshikazu Bando

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

Hiroshi Sugiyama

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

publication date

24 November 2014

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

volume

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

issue

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

page(s)

20-38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

23 February 2020

massive parallel sequencing

1 reference

based on heuristic

inferred from title

cites work

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Advantages of next-generation sequencing versus the microarray in epigenetic research

21 January 2018

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ChIP-seq: advantages and challenges of a maturing technology

21 January 2018

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Applications of next-generation sequencing in plant biology

21 January 2018

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Accurate whole human genome sequencing using reversible terminator chemistry

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A sequencing method based on real-time pyrophosphate

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Highly-multiplexed barcode sequencing: an efficient method for parallel analysis of pooled samples

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An integrated semiconductor device enabling non-optical genome sequencing

21 January 2018

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21 January 2018

Direct RNA sequencing

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Single-molecule DNA sequencing of a viral genome

21 January 2018

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Real-time DNA sequencing from single polymerase molecules

21 January 2018

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Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations

21 January 2018

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Sequencing technologies - the next generation

21 January 2018

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A Ligase-Mediated Gene Detection Technique

21 January 2018

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A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning

21 January 2018

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Accurate multiplex polony sequencing of an evolved bacterial genome

21 January 2018

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Discovery of alternative DNA structures: a heroic decade (1979-1989).

21 January 2018

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Inhibition of telomerase by G-quartet DNA structures

21 January 2018

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Ligand-driven G-quadruplex conformational switching by using an unusual mode of interaction

21 January 2018

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G-quadruplex nucleic acids as therapeutic targets

21 January 2018

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Exploring the differential recognition of DNA G-quadruplex targets by small molecules using dynamic combinatorial chemistry.

21 January 2018

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Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?

21 January 2018

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Preferential binding of a G-quadruplex ligand to human chromosome ends.

21 January 2018

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Small-molecule-mediated G-quadruplex isolation from human cells

21 January 2018

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G-quadruplex structures are stable and detectable in human genomic DNA.

21 January 2018

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Model-based analysis of ChIP-Seq (MACS)

21 January 2018

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Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine

21 January 2018

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The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs

21 January 2018

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Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

21 January 2018

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

21 January 2018

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Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing

21 January 2018

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Suppression of androgen receptor-mediated gene expression by a sequence-specific DNA-binding polyamide

21 January 2018

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Inhibition of vascular endothelial growth factor with a sequence-specific hypoxia response element antagonist

21 January 2018

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Repression of DNA-binding dependent glucocorticoid receptor-mediated gene expression

21 January 2018

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Modulation of NF-κB-dependent gene transcription using programmable DNA minor groove binders

21 January 2018

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Gene expression changes in a tumor xenograft by a pyrrole-imidazole polyamide

21 January 2018

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Activity of a Py-Im polyamide targeted to the estrogen response element

21 January 2018

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Tbx3 improves the germ-line competency of induced pluripotent stem cells

21 January 2018

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Integration of external signaling pathways with the core transcriptional network in embryonic stem cells

21 January 2018

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Eset partners with Oct4 to restrict extraembryonic trophoblast lineage potential in embryonic stem cells

21 January 2018

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ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions

21 January 2018

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A novel small molecule that alters shelterin integrity and triggers a DNA-damage response at telomeres

21 January 2018

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Small-molecule-induced DNA damage identifies alternative DNA structures in human genes

21 January 2018

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Structural Basis for Cyclic Py-Im Polyamide Allosteric Inhibition of Nuclear Receptor Binding

21 January 2018

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Allosteric modulation of DNA by small molecules

21 January 2018

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Antitumor activity of a pyrrole-imidazole polyamide

21 January 2018

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A synthetic small molecule for targeted transcriptional activation of germ cell genes in a human somatic cell.

21 January 2018

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Systematic evolution of ligands by exponential enrichment: RNA ligands to bacteriophage T4 DNA polymerase

21 January 2018

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Aptamers: molecular tools for analytical applications.

21 January 2018

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In vitro selection of RNA molecules that bind specific ligands

21 January 2018

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A DNA aptamer that binds adenosine and ATP.

21 January 2018

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Selection of single-stranded DNA molecules that bind and inhibit human thrombin

21 January 2018

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Aptamer directly evolved from live cells recognizes membrane bound immunoglobin heavy mu chain in Burkitt's lymphoma cells.

21 January 2018

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Inhibitory DNA ligands to platelet-derived growth factor B-chain

21 January 2018

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In vitro selection of DNA aptamers binding ethanolamine

21 January 2018

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Novel dual inhibitory function aptamer-siRNA delivery system for HIV-1 therapy

21 January 2018

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Continuous, real-time monitoring of cocaine in undiluted blood serum via a microfluidic, electrochemical aptamer-based sensor

21 January 2018

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Viral capsid DNA aptamer conjugates as multivalent cell-targeting vehicles

21 January 2018

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Real-time imaging of protein internalization using aptamer conjugates

21 January 2018

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Molecular recognition of small-cell lung cancer cells using aptamers

21 January 2018

1 reference

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Label-free electronic detection of thrombin in blood serum by using an aptamer-based sensor.

21 January 2018

1 reference

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Multivalent 4-1BB binding aptamers costimulate CD8+ T cells and inhibit tumor growth in mice.

21 January 2018

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Aptamers: an emerging class of therapeutics

21 January 2018

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Oligonucleotide aptamers that recognize small molecules

21 January 2018

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Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing

21 January 2018

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Acyclic identification of aptamers for human alpha-thrombin using over-represented libraries and deep sequencing

21 January 2018

1 reference

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Aptamer selection by high-throughput sequencing and informatic analysis

21 January 2018

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Aptamer-based multiplexed proteomic technology for biomarker discovery

21 January 2018

1 reference

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The application of a modified nucleotide in aptamer selection: novel thrombin aptamers containing 5-(1-pentynyl)-2'-deoxyuridine

21 January 2018

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Generation of high-affinity DNA aptamers using an expanded genetic alphabet

21 January 2018

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The methylome: approaches for global DNA methylation profiling

21 January 2018

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Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution

21 January 2018

1 reference

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Examination of the specificity of DNA methylation profiling techniques towards 5-methylcytosine and 5-hydroxymethylcytosine

21 January 2018

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

21 January 2018

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The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing

21 January 2018

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Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1

21 January 2018

1 reference

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The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain

21 January 2018

1 reference

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Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine

21 January 2018

1 reference

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Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA

21 January 2018

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The discovery of 5-formylcytosine in embryonic stem cell DNA.

21 January 2018

1 reference

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Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

21 January 2018

1 reference

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Tet-mediated covalent labelling of 5-methylcytosine for its genome-wide detection and sequencing

21 January 2018

1 reference

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Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming

21 January 2018

1 reference

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Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives

21 January 2018

1 reference

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Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.201402556

DNA replication fidelity and cancer

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.201402556

Direct detection and sequencing of damaged DNA bases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.201402556

Genome-wide mapping of DNA strand breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.201402556

Mapping genomic hotspots of DNA damage by a single-strand-DNA-compatible and strand-specific ChIP-seq method.

21 January 2018

1 reference

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21 January 2018

1 reference

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Spatial organization of the mammalian genome surveillance machinery in response to DNA strand breaks

21 January 2018

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Systematic identification of fragile sites via genome-wide location analysis of gamma-H2AX.

21 January 2018

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Genome-wide profiles of H2AX and γ-H2AX differentiate endogenous and exogenous DNA damage hotspots in human cells

21 January 2018

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Replication stress induces 53BP1-containing OPT domains in G1 cells

21 January 2018

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H2AX phosphorylation within the G1 phase after UV irradiation depends on nucleotide excision repair and not DNA double-strand breaks

21 January 2018

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BRCA1 associates with the inactive X chromosome in late S-phase, coupled with transient H2AX phosphorylation

21 January 2018

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Topoisomerase I suppresses genomic instability by preventing interference between replication and transcription

21 January 2018

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Nucleotide-resolution DNA double-strand break mapping by next-generation sequencing

21 January 2018

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Spatial organization of the mouse genome and its role in recurrent chromosomal translocations

21 January 2018

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Advances in DNA-ligands with groove binding, intercalating and/or alkylating activity: chemistry, DNA-binding and biology.

21 January 2018

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Recognition of DNA by designed ligands at subnanomolar concentrations

21 January 2018

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Chromatin challenges during DNA replication and repair

21 January 2018

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Regulation of gene expression by small molecules

21 January 2018

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Guiding the design of synthetic DNA-binding molecules with massively parallel sequencing

21 January 2018

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Design of sequence-specific DNA binding molecules for DNA methyltransferase inhibition

21 January 2018

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Pyrrole-imidazole hairpin polyamides with high affinity at 5'-CGCG-3' DNA sequence; influence of cytosine methylation on binding

21 January 2018

1 reference

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Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing.

21 January 2018

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DREME: motif discovery in transcription factor ChIP-seq data

21 January 2018

1 reference

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Combinatorial determination of sequence specificity for nanomolar DNA-binding hairpin polyamides.

21 January 2018

1 reference

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Defining the sequence-recognition profile of DNA-binding molecules

21 January 2018

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Quantitative microarray profiling of DNA-binding molecules

21 January 2018

1 reference

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Specificity landscapes of DNA binding molecules elucidate biological function

21 January 2018

1 reference

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Pluripotent stem cells induced from mouse somatic cells by small-molecule compounds

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.201402556

The expanding scope of DNA sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.201402556

The Nuclear Receptor Nr5a2 Can Replace Oct4 in the Reprogramming of Murine Somatic Cells to Pluripotent Cells

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.201402556

Label-Free Electronic Detection of Thrombin in Blood Serum by Using an Aptamer-Based Sensor

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.201402556

G-quadruplex-binding ligand-induced DNA synapsis inside a DNA origami frame

21 January 2018

1 reference

https://api.crossref.org/works/10.1002%2FCBIC.201402556

21 January 2018

Identifiers

DOI

10.1002/CBIC.201402556

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25421391%20AND%20SRC:MED&resulttype=core&format=json

23 February 2020

1 reference