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Reconciliation with non-binary species trees.
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Europe PubMed Central
PMC publication ID
3205801
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
title
Reconciliation with non-binary species trees
(English)
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Europe PubMed Central
PMC publication ID
3205801
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
main subject
phylogenetic reconciliation
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author
Maureen Stolzer
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2
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Europe PubMed Central
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3205801
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
Dannie Durand
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4
object named as
Dannie Durand
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Europe PubMed Central
PMC publication ID
3205801
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
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14 January 2020
Benjamin Vernot
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Benjamin Vernot
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Europe PubMed Central
PMC publication ID
3205801
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
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14 January 2020
author name string
Aiton Goldman
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3
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3205801
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
publication date
1 October 2008
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Europe PubMed Central
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3205801
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
published in
Journal of Computational Biology
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PMC publication ID
3205801
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
volume
15
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Europe PubMed Central
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3205801
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
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14 January 2020
issue
8
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Europe PubMed Central
PMC publication ID
3205801
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
page(s)
981-1006
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Europe PubMed Central
PMC publication ID
3205801
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
cites work
Gene family evolution across 12 Drosophila genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Bias in phylogenetic tree reconciliation methods: implications for vertebrate genome evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
primetv: a viewer for reconciled trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
The evolution of mammalian gene families
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
CAFE: a computational tool for the study of gene family evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
TreeFam: a curated database of phylogenetic trees of animal gene families
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Evolutionary change of the numbers of homeobox genes in bilateral animals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
The Adaptive Evolution Database (TAED): a phylogeny based tool for comparative genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Database resources of the National Center for Biotechnology Information
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Birds in a bush: five genes indicate explosive evolution of avian orders
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Major events in the genome evolution of vertebrates: paranome age and size differ considerably between ray-finned fishes and land vertebrates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Pharmacophylogenomics: genes, evolution and drug targets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
How should species phylogenies be inferred from sequence data?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Extensive genomic duplication during early chordate evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
ATV: display and manipulation of annotated phylogenetic trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
An orphaned mammalian beta-globin gene of ancient evolutionary origin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
T-Coffee: A novel method for fast and accurate multiple sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
HOBACGEN: database system for comparative genomics in bacteria
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
From gene to organismal phylogeny: reconciled trees and the gene tree/species tree problem
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Reconstruction of ancient molecular phylogeny
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Evolutionary relationship of DNA sequences in finite populations
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Gene genealogy and variance of interpopulational nucleotide differences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Relationships between gene trees and species trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
12 July 2018
Optimal gene trees from sequences and species trees using a soft interpretation of parsimony.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
The gain and loss of genes during 600 million years of vertebrate evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
A hybrid micro-macroevolutionary approach to gene tree reconstruction.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Is homoplasy or lineage sorting the source of incongruent mtdna and nuclear gene trees in the stiff-tailed ducks (Nomonyx-Oxyura)?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Duplication and DNA segmental loss in the rice genome: implications for diploidization.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
The serine repeat antigen (SERA) gene family phylogeny in Plasmodium: the impact of GC content and reconciliation of gene and species trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Evidence that rice and other cereals are ancient aneuploids
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Bayesian gene/species tree reconciliation and orthology analysis using MCMC.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
The age of the Arabidopsis thaliana genome duplication
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Age distribution of human gene families shows significant roles of both large- and small-scale duplications in vertebrate evolution
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Phylogeny of the Lake Tanganyika cichlid species flock and its relationship to the Central and East African haplochromine cichlid fish faunas
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
A simple algorithm to infer gene duplication and speciation events on a gene tree.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
NOTUNG: a program for dating gene duplications and optimizing gene family trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
GeneTree: comparing gene and species phylogenies using reconciled trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Duplication-based measures of difference between gene and species trees.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Newly identified paralogous groups on mouse chromosomes 5 and 11 reveal the age of a T-box cluster duplication
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
A biologically consistent model for comparing molecular phylogenies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
mtDNA diversity in rhesus monkeys reveals overestimates of divergence time and paraphyly with neighboring species
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3205801
retrieved
26 September 2018
Patterns of speciation and limits to phylogenetic resolution
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18808330
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
POLYTOMIES AND THE POWER OF PHYLOGENETIC INFERENCE.
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18808330
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1089/CMB.2008.0092
1 reference
stated in
Europe PubMed Central
PMC publication ID
3205801
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
DBLP publication ID
journals/jcb/VernotSGD08
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMC publication ID
3205801
1 reference
stated in
Europe PubMed Central
PMC publication ID
3205801
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
PubMed publication ID
18808330
1 reference
stated in
Europe PubMed Central
PMC publication ID
3205801
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18808330%20AND%20SRC:MED&resulttype=core&format=json
retrieved
14 January 2020
ResearchGate publication ID
23274217
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