(Q35505341)

English

Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.).

scientific article published on 21 April 2015

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scholarly article

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Europe PubMed Central

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7 March 2020

Using RNA-Seq to assemble a rose transcriptome with more than 13,000 full-length expressed genes and to develop the WagRhSNP 68k Axiom SNP array for rose (Rosa L.). (English)

1 reference

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7 March 2020

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1 reference

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based on heuristic

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10

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7 March 2020

Marinus J.M. Smulders

13

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7 March 2020

author name string

Carole F S Koning-Boucoiran

1

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7 March 2020

G Danny Esselink

2

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7 March 2020

Mirjana Vukosavljev

3

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7 March 2020

Wendy P C van 't Westende

4

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7 March 2020

Virginia W Gitonga

5

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7 March 2020

Frans A Krens

6

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7 March 2020

Roeland E Voorrips

7

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7 March 2020

W Eric van de Weg

8

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7 March 2020

Dietmar Schulz

9

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7 March 2020

Chris Maliepaard

11

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7 March 2020

Paul Arens

12

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7 March 2020

publication date

21 April 2015

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7 March 2020

Frontiers in Plant Science

1 reference

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7 March 2020

6

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7 March 2020

249

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7 March 2020

describes a project that uses

1 reference

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De novo sequencing analysis of the Rosa roxburghii fruit transcriptome reveals putative ascorbate biosynthetic genes and EST-SSR markers

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Phylogeny and biogeography of wild roses with specific attention to polyploids

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12 July 2018

A comparison of next generation sequencing technologies for transcriptome assembly and utility for RNA-Seq in a non-model bird

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12 July 2018

The Genome Database for Rosaceae (GDR): year 10 update

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12 July 2018

Genomics of Compositae crops: reference transcriptome assemblies and evidence of hybridization with wild relatives

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QualitySNPng: a user-friendly SNP detection and visualization tool

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1 reference

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12 July 2018

Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars

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12 July 2018

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1 reference

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12 July 2018

Isolation, Molecular Characterization, and Mapping of Four Rose MLO Orthologs.

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12 July 2018

COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly

1 reference

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12 July 2018

Sequencing the genome of Marssonina brunnea reveals fungus-poplar co-evolution

1 reference

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12 July 2018

Development and evaluation of a 9K SNP array for peach by internationally coordinated SNP detection and validation in breeding germplasm

1 reference

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12 July 2018

The mode of inheritance in tetraploid cut roses

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12 July 2018

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12 July 2018

Genome-wide SNP detection, validation, and development of an 8K SNP array for apple

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4404716

12 July 2018

iAssembler: a package for de novo assembly of Roche-454/Sanger transcriptome sequences

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12 July 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

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12 July 2018

The genome of woodland strawberry (Fragaria vesca)

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12 July 2018

Towards a unified genetic map for diploid roses

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12 July 2018

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12 July 2018

Biases in Illumina transcriptome sequencing caused by random hexamer priming

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12 July 2018

Molecular markers from a BAC contig spanning the Rdr1 locus: a tool for marker-assisted selection in roses

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12 July 2018

QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species

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12 July 2018

Construction of an integrated map of rose with AFLP, SSR, PK, RGA, RFLP, SCAR and morphological markers.

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12 July 2018

InterProScan--an integration platform for the signature-recognition methods in InterPro

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12 July 2018

Efficient development of highly polymorphic microsatellite markers based on polymorphic repeats in transcriptome sequences of multiple individuals

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26 September 2018

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26 September 2018

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26 September 2018

High resolution melting analysis of almond SNPs derived from ESTs.

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26 September 2018

Using cDNA and genomic sequences as tools to develop SNP strategies in cassava (Manihot esculenta Crantz)

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12 December 2020

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10.3389/FPLS.2015.00249

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7 March 2020

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Europe PubMed Central

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7 March 2020

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Europe PubMed Central

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7 March 2020

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