(Q42688624)

4 November 2017

title

Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne (English)

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4 November 2017

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Lolium perenne

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7

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Christian Bendixen

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Torben Asp

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object named as

Torben Asp

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Tom Ruttink

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Antje Rohde

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Pierre Rouzé

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Isabel Roldan-Ruiz

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publication date

21 February 2013

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Plant Biotechnology Journal

4 November 2017

published in

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4 November 2017

volume

11

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4 November 2017

issue

5

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4 November 2017

page(s)

605-617

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De novo analysis of transcriptome dynamics in the migratory locust during the development of phase traits

4 November 2017

cites work

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Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana

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Gene-associated single nucleotide polymorphism discovery in perennial ryegrass (Lolium perenne L.).

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Optimizing de novo common wheat transcriptome assembly using short-read RNA-Seq data

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Sense from sequence reads: methods for alignment and assembly

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De novo assembly of chickpea transcriptome using short reads for gene discovery and marker identification

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Full-length transcriptome assembly from RNA-Seq data without a reference genome

21 January 2018

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Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs

21 January 2018

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CAP3: A DNA sequence assembly program

21 January 2018

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Sequence diversity in three tomato species: SNPs, markers, and molecular evolution

21 January 2018

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Orthologs, paralogs, and evolutionary genomics

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Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph

21 January 2018

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Target-enrichment strategies for next-generation sequencing

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Next-generation transcriptome assembly

21 January 2018

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Comprehensive sequence analysis of 24,783 barley full-length cDNAs derived from 12 clone libraries.

21 January 2018

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Unlocking the barley genome by chromosomal and comparative genomics

21 January 2018

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Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

21 January 2018

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Assembly algorithms for next-generation sequencing data

21 January 2018

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TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

21 January 2018

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The perennial ryegrass GenomeZipper: targeted use of genome resources for comparative grass genomics

21 January 2018

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PLAZA: a comparative genomics resource to study gene and genome evolution in plants

21 January 2018

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Development of 5006 full-length CDNAs in barley: a tool for accessing cereal genomics resources

21 January 2018

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Designing a transcriptome next-generation sequencing project for a nonmodel plant species

21 January 2018

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A transcriptome map of perennial ryegrass (Lolium perenne L.).

21 January 2018

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Optimization of de novo transcriptome assembly from next-generation sequencing data

21 January 2018

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Genome sequencing and analysis of the model grass Brachypodium distachyon

21 January 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

21 January 2018

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Dissecting plant genomes with the PLAZA comparative genomics platform

21 January 2018

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The flowering world: a tale of duplications

21 January 2018

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The genome of the domesticated apple (Malus × domestica Borkh.)

21 January 2018

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Strategies for transcriptome analysis in nonmodel plants

21 January 2018

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Targeted re-sequencing of the allohexaploid wheat exome

21 January 2018

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The phylogeny of the BEP clade in grasses revisited: evidence from the whole-genome sequences of chloroplasts.

21 January 2018

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Sequencing and assembly of highly heterozygous genome of Vitis vinifera L. cv Pinot Noir: problems and solutions.

21 January 2018

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21 January 2018

Identifiers

DOI

10.1111/PBI.12051

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4 November 2017

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