(Q35534974)

8 August 2017

title

Identification of elements in human long 3' UTRs that inhibit nonsense-mediated decay (English)

1 reference

8 August 2017

Jens Lykke-Andersen

4

0 references

author name string

Kalodiah G Toma

series ordinal

1

1 reference

8 August 2017

Indrani Rebbapragada

series ordinal

2

1 reference

8 August 2017

Sébastien Durand

series ordinal

3

1 reference

8 August 2017

language of work or name

English

0 references

publication date

24 March 2015

1 reference

8 August 2017

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8 August 2017

volume

21

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8 August 2017

issue

5

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8 August 2017

page(s)

887-897

1 reference

describes a project that uses

8 August 2017

ImageQuant

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC4408796/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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The interaction of cytoplasmic poly(A)-binding protein with eukaryotic initiation factor 4G suppresses nonsense-mediated mRNA decay

12 July 2018

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Posttranscriptional control of the stem cell and neurogenic programs by the nonsense-mediated RNA decay pathway

12 July 2018

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Organizing principles of mammalian nonsense-mediated mRNA decay

12 July 2018

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Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay

12 July 2018

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Nonsense-mediated mRNA decay - mechanisms of substrate mRNA recognition and degradation in mammalian cells

12 July 2018

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Identification of hundreds of novel UPF1 target transcripts by direct determination of whole transcriptome stability

12 July 2018

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Autoregulation of the nonsense-mediated mRNA decay pathway in human cells

12 July 2018

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Interaction of PABPC1 with the translation initiation complex is critical to the NMD resistance of AUG-proximal nonsense mutations.

12 July 2018

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12 July 2018

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RNA homeostasis governed by cell type-specific and branched feedback loops acting on NMD.

12 July 2018

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Perturbation of thymocyte development in nonsense-mediated decay (NMD)-deficient mice

12 July 2018

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Identification of a microRNA that activates gene expression by repressing nonsense-mediated RNA decay

12 July 2018

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Upf1 senses 3'UTR length to potentiate mRNA decay

12 July 2018

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SMG6 interacts with the exon junction complex via two conserved EJC-binding motifs (EBMs) required for nonsense-mediated mRNA decay

12 July 2018

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Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors

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SMD and NMD are competitive pathways that contribute to myogenesis: effects on PAX3 and myogenin mRNAs

12 July 2018

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NMD is essential for hematopoietic stem and progenitor cells and for eliminating by-products of programmed DNA rearrangements

12 July 2018

1 reference

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A competition between stimulators and antagonists of Upf complex recruitment governs human nonsense-mediated mRNA decay

12 July 2018

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Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region

12 July 2018

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Interactions between UPF1, eRFs, PABP and the exon junction complex suggest an integrated model for mammalian NMD pathways

12 July 2018

1 reference

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Proximity of the poly(A)-binding protein to a premature termination codon inhibits mammalian nonsense-mediated mRNA decay

12 July 2018

1 reference

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12 July 2018

1 reference

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Communication with the exon-junction complex and activation of nonsense-mediated decay by human Upf proteins occur in the cytoplasm.

12 July 2018

1 reference

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The abundance of RNPS1, a protein component of the exon junction complex, can determine the variability in efficiency of the Nonsense Mediated Decay pathway

12 July 2018

1 reference

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The nonsense-mediated decay RNA surveillance pathway

12 July 2018

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Applying nonsense-mediated mRNA decay research to the clinic: progress and challenges

12 July 2018

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A 3' UTR sequence stabilizes termination codons in the unspliced RNA of Rous sarcoma virus

12 July 2018

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Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements

12 July 2018

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Nonsense-mediated mRNA decay in mammals

12 July 2018

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Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise

12 July 2018

1 reference

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Human PABP binds AU-rich RNA via RNA-binding domains 3 and 4.

12 July 2018

1 reference

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New insights into the formation of active nonsense-mediated decay complexes.

12 July 2018

1 reference

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Y14 and hUpf3b form an NMD-activating complex

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

Communication of the position of exon-exon junctions to the mRNA surveillance machinery by the protein RNPS1

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

Role of the nonsense-mediated decay factor hUpf3 in the splicing-dependent exon-exon junction complex

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

Human Upf proteins target an mRNA for nonsense-mediated decay when bound downstream of a termination codon

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

The RNA binding protein Pub1 modulates the stability of transcripts containing upstream open reading frames

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

Pre-mRNA splicing alters mRNP composition: evidence for stable association of proteins at exon-exon junctions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

Nonsense-mediated mRNA decay in health and disease

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

Cap-independent polysomal association of natural mRNAs encoding c-myc, BiP, and eIF4G conferred by internal ribosome entry sites

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

Identifying the right stop: determining how the surveillance complex recognizes and degrades an aberrant mRNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

Lengthening of 3'UTR increases with morphological complexity in animal evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

EJC-independent degradation of nonsense immunoglobulin-mu mRNA depends on 3' UTR length.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4408796

Affinity purification of ARE-binding proteins identifies poly(A)-binding protein 1 as a potential substrate in MK2-induced mRNA stabilization

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25805855

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1261/RNA.048637.114

1 reference

8 August 2017

1 reference

8 August 2017

1 reference