(Q35539344)

8 August 2017

title

A statistical method for assessing peptide identification confidence in accurate mass and time tag proteomics (English)

1 reference

8 August 2017

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Samuel O Purvine

5

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Joshua N Adkins

object named as

Joshua N Adkins

2

0 references

Richard D. Smith

object named as

Richard D Smith

8

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Matthew E Monroe

4

object named as

Matthew E Monroe

1 reference

8 August 2017

3

Gordon W Slysz

1 reference

8 August 2017

6

Yuliya V Karpievitch

1 reference

8 August 2017

Jeffrey R Stanley

1

1 reference

8 August 2017

Gordon A Anderson

7

1 reference

8 August 2017

Alan R Dabney

9

1 reference

8 August 2017

language of work or name

English

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publication date

15 July 2011

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8 August 2017

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8 August 2017

volume

83

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8 August 2017

issue

16

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8 August 2017

page(s)

6135-6140

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Peptide sequence confidence in accurate mass and time analysis and its use in complex proteomics experiments

8 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Spectral probabilities and generating functions of tandem mass spectra: a strike against decoy databases

27 July 2018

1 reference

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Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

SuperHirn - a novel tool for high resolution LC-MS-based peptide/protein profiling

27 July 2018

1 reference

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A platform for accurate mass and time analyses of mass spectrometry data

27 July 2018

1 reference

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VIPER: an advanced software package to support high-throughput LC-MS peptide identification

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Spatial mapping of protein abundances in the mouse brain by voxelation integrated with high-throughput liquid chromatography-mass spectrometry

27 July 2018

1 reference

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Mass measurement accuracy in analyses of highly complex mixtures based upon multidimensional recalibration

27 July 2018

1 reference

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Robust algorithm for alignment of liquid chromatography-mass spectrometry analyses in an accurate mass and time tag data analysis pipeline

27 July 2018

1 reference

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27 July 2018

1 reference

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Advances in proteomics data analysis and display using an accurate mass and time tag approach.

27 July 2018

1 reference

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The utility of accurate mass and LC elution time information in the analysis of complex proteomes

27 July 2018

1 reference

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Statistical model for large-scale peptide identification in databases from tandem mass spectra using SEQUEST.

27 July 2018

1 reference

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Open mass spectrometry search algorithm

27 July 2018

1 reference

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TANDEM: matching proteins with tandem mass spectra

27 July 2018

1 reference

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A statistical model for identifying proteins by tandem mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

A hypergeometric probability model for protein identification and validation using tandem mass spectral data and protein sequence databases

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Proteome analyses using accurate mass and elution time peptide tags with capillary LC time-of-flight mass spectrometry

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Novel MMP-9 substrates in cancer cells revealed by a label-free quantitative proteomics approach

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

DeconMSn: a software tool for accurate parent ion monoisotopic mass determination for tandem mass spectra

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

A hierarchical statistical model to assess the confidence of peptides and proteins inferred from tandem mass spectrometry

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Estimating probabilities of peptide database identifications to LC-FTICR-MS observations

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

Probability-based protein identification by searching sequence databases using mass spectrometry data

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3212438

An accurate mass tag strategy for quantitative and high-throughput proteome measurements

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21692516

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Experimental Protein Mixture for Validating Tandem Mass Spectral Analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21692516

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1021/AC2009806

1 reference

8 August 2017

1 reference

8 August 2017

1 reference