(Q35546078)

8 August 2017

title

Assessing the impact of non-differential genotyping errors on rare variant tests of association (English)

1 reference

8 August 2017

1 reference

2

Shyam Gopalakrishnan

1 reference

8 August 2017

Scott Powers

1

1 reference

8 August 2017

Nathan Tintle

series ordinal

3

1 reference

8 August 2017

language of work or name

1 reference

15 October 2011

1 reference

8 August 2017

1 reference

8 August 2017

volume

72

1 reference

8 August 2017

issue

3

1 reference

8 August 2017

page(s)

153-160

1 reference

Rare-variant association testing for sequencing data with the sequence kernel association test

8 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Genotype and SNP calling from next-generation sequencing data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Adaptive tests for association analysis of rare variants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Testing for an unusual distribution of rare variants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Confounded by sequencing depth in association studies of rare alleles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

A comparison of approaches to account for uncertainty in analysis of imputed genotypes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Base-calling for next-generation sequencing platforms

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

HiTEC: accurate error correction in high-throughput sequencing data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Extending rare-variant testing strategies: analysis of noncoding sequence and imputed genotypes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

To identify associations with rare variants, just WHaIT: Weighted haplotype and imputation-based tests

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Statistical analysis strategies for association studies involving rare variants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Direct measure of the de novo mutation rate in autism and schizophrenia cohorts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Spoiling the whole bunch: quality control aimed at preserving the integrity of high-throughput genotyping

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

APOE is not associated with Alzheimer disease: a cautionary tale of genotype imputation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Pooled association tests for rare variants in exon-resequencing studies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Approaches for evaluating rare polymorphisms in genetic association studies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

The relationship between imputation error and statistical power in genetic association studies in diverse populations

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

An evaluation of statistical approaches to rare variant analysis in genetic association studies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Incorporating duplicate genotype data into linear trend tests of genetic association: methods and cost-effectiveness

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Common vs. rare allele hypotheses for complex diseases

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Genotype-imputation accuracy across worldwide human populations

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

A groupwise association test for rare mutations using a weighted sum statistic

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Mapping short DNA sequencing reads and calling variants using mapping quality scores

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

The impact of next-generation sequencing technology on genetics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Using duplicate genotyped data in genetic analyses: testing association and estimating error rates

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Effects of differential genotyping error rate on the type I error probability of case-control studies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Characteristics of replicated single-nucleotide polymorphism genotypes from COGA: Affymetrix and Center for Inherited Disease Research

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

Factors affecting statistical power in the detection of genetic association

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

A new expectation-maximization statistical test for case-control association studies considering rare variants obtained by high-throughput sequencing

12 July 2018

1 reference

What SNP genotyping errors are most costly for genetic association studies?

21 January 2018

1 reference

Quantifying the percent increase in minimum sample size for SNP genotyping errors in genetic model-based association studies

21 January 2018

1 reference

The effects of SNP genotyping errors on the power of the Cochran-Armitage linear trend test for case/control association studies.

21 January 2018

1 reference

Power and sample size calculations for case-control genetic association tests when errors are present: application to single nucleotide polymorphisms

21 January 2018

1 reference

SNP mistyping in genotyping arrays--an important cause of spurious association in case-control studies.

21 January 2018

1 reference

Increase of rejection rate in case-control studies with the differential genotyping error rates

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3214826

26 September 2018

Identifiers

DOI

10.1159/000332222

1 reference

8 August 2017

1 reference

8 August 2017

1 reference