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siRNA-directed DNA Methylation in Plants
scientific article published on February 2015
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scholarly article
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Europe PubMed Central
PMC publication ID
4412961
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
title
siRNA-directed DNA Methylation in Plants
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
4412961
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
main subject
DNA methylation
0 references
author
Meng Xie
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4412961
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
author name string
Bin Yu
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
4412961
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
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7 March 2020
publication date
1 February 2015
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4412961
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retrieved
7 March 2020
published in
Current Genomics
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PMC publication ID
4412961
reference URL
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retrieved
7 March 2020
volume
16
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Europe PubMed Central
PMC publication ID
4412961
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
issue
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
4412961
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
page(s)
23-31
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Europe PubMed Central
PMC publication ID
4412961
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
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7 March 2020
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In vitro transcription activities of Pol IV, Pol V, and RDR2 reveal coupling of Pol IV and RDR2 for dsRNA synthesis in plant RNA silencing
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In vitro activities of the multifunctional RNA silencing polymerase QDE-1 of Neurospora crassa
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JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis
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12 July 2018
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation.
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A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis
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Establishing, maintaining and modifying DNA methylation patterns in plants and animals
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12 July 2018
An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis
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RNA-directed DNA methylation and plant development require an IWR1-type transcription factor
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Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis
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12 July 2018
IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana
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12 July 2018
A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development
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Extensive demethylation of repetitive elements during seed development underlies gene imprinting
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12 July 2018
An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein.
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12 July 2018
RNA polymerase V transcription guides ARGONAUTE4 to chromatin
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12 July 2018
RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family.
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12 July 2018
NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation
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12 July 2018
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II
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12 July 2018
SRA-domain proteins required for DRM2-mediated de novo DNA methylation
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12 July 2018
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
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12 July 2018
Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana
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12 July 2018
The FHA domain proteins DAWDLE in Arabidopsis and SNIP1 in humans act in small RNA biogenesis
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12 July 2018
Viral genome methylation as an epigenetic defense against geminiviruses
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Plant ARGONAUTES.
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12 July 2018
A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation.
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12 July 2018
PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis
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12 July 2018
Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.
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Role of RNA polymerase IV in plant small RNA metabolism
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MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
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Nomenclature and functions of RNA-directed RNA polymerases
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12 July 2018
Dicing and slicing: the core machinery of the RNA interference pathway
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12 July 2018
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.
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12 July 2018
Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.
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12 July 2018
Gardening the genome: DNA methylation in Arabidopsis thaliana
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12 July 2018
RNA polymerase IV directs silencing of endogenous DNA.
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12 July 2018
Genetic and functional diversification of small RNA pathways in plants
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12 July 2018
ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation
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12 July 2018
Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
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12 July 2018
Arabidopsis cmt3 chromomethylase mutations block non-CG methylation and silencing of an endogenous gene
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12 July 2018
Transcriptional silencing and promoter methylation triggered by double-stranded RNA
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12 July 2018
Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
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12 July 2018
Reconstructing de novo silencing of an active plant retrotransposon.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
Ago hook and RNA helicase motifs underpin dual roles for SDE3 in antiviral defense and silencing of nonconserved intergenic regions.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
NERD, a plant-specific GW protein, defines an additional RNAi-dependent chromatin-based pathway in Arabidopsis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
DNA methylation mediated by a microRNA pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
Evolution of the RNA-dependent RNA polymerase (RdRP) genes: duplications and possible losses before and after the divergence of major eukaryotic groups
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
Atypical RNA polymerase subunits required for RNA-directed DNA methylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
RNA silencing genes control de novo DNA methylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
Role of the arabidopsis DRM methyltransferases in de novo DNA methylation and gene silencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
Requirement of CHROMOMETHYLASE3 for maintenance of CpXpG methylation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4412961
retrieved
26 September 2018
The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25937811
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
HDA6 directly interacts with DNA methyltransferase MET1 and maintains transposable element silencing in Arabidopsis
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25937811
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Locus-specific control of DNA methylation by the Arabidopsis SUVH5 histone methyltransferase
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25937811
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Cytoplasmic assembly and selective nuclear import of Arabidopsis Argonaute4/siRNA complexes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25937811
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
The DNA- and RNA-binding protein FACTOR of DNA METHYLATION 1 requires XH domain-mediated complex formation for its function in RNA-directed DNA methylation
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25937811
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25937811
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Arabidopsis thaliana DNA methylation mutants
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/25937811
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.2174/1389202915666141128002211
1 reference
stated in
Europe PubMed Central
PMC publication ID
4412961
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
PMC publication ID
4412961
1 reference
stated in
Europe PubMed Central
PMC publication ID
4412961
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
PubMed publication ID
25937811
1 reference
stated in
Europe PubMed Central
PMC publication ID
4412961
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25937811%20AND%20SRC:MED&resulttype=core&format=json
retrieved
7 March 2020
ResearchGate publication ID
273403692
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