(Q34202641)

31 July 2017

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title

Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. (English)

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31 July 2017

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2

Craig S Pikaard

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31 July 2017

Jeremy R Haag

1

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31 July 2017

publication date

22 July 2011

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Nature Reviews Molecular Cell Biology

31 July 2017

published in

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31 July 2017

volume

12

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31 July 2017

issue

8

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31 July 2017

page(s)

483-492

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https://scigraph.springernature.com/pub.10.1038/nrm3152

31 July 2017

exact match

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cites work

Evolution of multisubunit RNA polymerases in the three domains of life.

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Structure of eukaryotic RNA polymerases

31 March 2020

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Plant-specific multisubunit RNA polymerase in gene silencing

31 March 2020

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Roles of RNA polymerase IV in gene silencing

31 March 2020

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Pathways through the small RNA world of plants

31 March 2020

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Metal A and metal B sites of nuclear RNA polymerases Pol IV and Pol V are required for siRNA-dependent DNA methylation and gene silencing

31 March 2020

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Functional divergence in the growing family of RNA polymerases

31 March 2020

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Evolutionary history of plant multisubunit RNA polymerases IV and V: subunit origins via genome-wide and segmental gene duplications, retrotransposition, and lineage-specific subfunctionalization.

31 March 2020

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

31 March 2020

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RNA polymerase IV directs silencing of endogenous DNA.

31 March 2020

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Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation

31 March 2020

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Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis.

31 March 2020

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Atypical RNA polymerase subunits required for RNA-directed DNA methylation

31 March 2020

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Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes

31 March 2020

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Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II

31 March 2020

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An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II.

31 March 2020

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PolIVb influences RNA-directed DNA methylation independently of its role in siRNA biogenesis

31 March 2020

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Role of RNA polymerase IV in plant small RNA metabolism

31 March 2020

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Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis.

31 March 2020

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RNA silencing directed against geminiviruses: post-transcriptional and epigenetic components.

31 March 2020

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The Arabidopsis chromatin-modifying nuclear siRNA pathway involves a nucleolar RNA processing center

31 March 2020

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Genome-wide profiling and analysis of Arabidopsis siRNAs

31 March 2020

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Genetic and functional diversification of small RNA pathways in plants

31 March 2020

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An SNF2 protein associated with nuclear RNA silencing and the spread of a silencing signal between cells in Arabidopsis

31 March 2020

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Biochemical specialization within Arabidopsis RNA silencing pathways

31 March 2020

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Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning

31 March 2020

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Methylation as a crucial step in plant microRNA biogenesis

31 March 2020

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Methylation protects miRNAs and siRNAs from a 3'-end uridylation activity in Arabidopsis.

31 March 2020

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The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci

31 March 2020

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Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation

31 March 2020

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Asymmetry in the assembly of the RNAi enzyme complex

31 March 2020

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Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5' terminal nucleotide

31 March 2020

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Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation

31 March 2020

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An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana.

31 March 2020

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Involvement of putative SNF2 chromatin remodeling protein DRD1 in RNA-directed DNA methylation

31 March 2020

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A structural-maintenance-of-chromosomes hinge domain-containing protein is required for RNA-directed DNA methylation.

31 March 2020

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IDN1 and IDN2 are required for de novo DNA methylation in Arabidopsis thaliana

31 March 2020

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An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation.

31 March 2020

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RNA polymerase V transcription guides ARGONAUTE4 to chromatin

31 March 2020

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A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis

31 March 2020

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A conserved transcriptional regulator is required for RNA-directed DNA methylation and plant development

31 March 2020

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RNA-directed DNA methylation and plant development require an IWR1-type transcription factor

31 March 2020

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Iwr1 directs RNA polymerase II nuclear import.

31 March 2020

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DCL is a plant-specific protein required for plastid ribosomal RNA processing and embryo development

31 March 2020

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Reiterated WG/GW motifs form functionally and evolutionarily conserved ARGONAUTE-binding platforms in RNAi-related components.

31 March 2020

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Crystal structure of Argonaute and its implications for RISC slicer activity

31 March 2020

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Purified Argonaute2 and an siRNA form recombinant human RISC

31 March 2020

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Role of Arabidopsis AGO6 in siRNA accumulation, DNA methylation and transcriptional gene silencing

31 March 2020

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An SGS3-like protein functions in RNA-directed DNA methylation and transcriptional gene silencing in Arabidopsis

31 March 2020

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Establishing, maintaining and modifying DNA methylation patterns in plants and animals

31 March 2020

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RNA-directed DNA methylation requires an AGO4-interacting member of the SPT5 elongation factor family.

31 March 2020

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An effector of RNA-directed DNA methylation in arabidopsis is an ARGONAUTE 4- and RNA-binding protein.

31 March 2020

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Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

31 March 2020

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Highly integrated single-base resolution maps of the epigenome in Arabidopsis

31 March 2020

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HDA6, a putative histone deacetylase needed to enhance DNA methylation induced by double-stranded RNA

31 March 2020

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NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation

31 March 2020

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Mechanisms of HDA6-mediated rRNA gene silencing: suppression of intergenic Pol II transcription and differential effects on maintenance versus siRNA-directed cytosine methylation

31 March 2020

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Control of DNA methylation and heterochromatic silencing by histone H2B deubiquitination

31 March 2020

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JMJ14, a JmjC domain protein, is required for RNA silencing and cell-to-cell movement of an RNA silencing signal in Arabidopsis

31 March 2020

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Involvement of a Jumonji-C domain-containing histone demethylase in DRM2-mediated maintenance of DNA methylation.

31 March 2020

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JMJ14 is an H3K4 demethylase regulating flowering time in Arabidopsis

31 March 2020

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RNA Polymerase II Is Required for RNAi-Dependent Heterochromatin Assembly

31 March 2020

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Intergenic transcription by RNA polymerase II coordinates Pol IV and Pol V in siRNA-directed transcriptional gene silencing in Arabidopsis

31 March 2020

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Paramutation in maize: RNA mediated trans-generational gene silencing

31 March 2020

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Paramutation and development

31 March 2020

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RNA polymerase IV functions in paramutation in Zea mays.

31 March 2020

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An RNA-dependent RNA polymerase is required for paramutation in maize

31 March 2020

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Production and processing of siRNA precursor transcripts from the highly repetitive maize genome

31 March 2020

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A dominant mutation in mediator of paramutation2, one of three second-largest subunits of a plant-specific RNA polymerase, disrupts multiple siRNA silencing processes

31 March 2020

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Diversity of Pol IV function is defined by mutations at the maize rmr7 locus

31 March 2020

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Silencing signals in plants: a long journey for small RNAs

31 March 2020

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DICER-LIKE 4 is required for RNA interference and produces the 21-nucleotide small interfering RNA component of the plant cell-to-cell silencing signal

31 March 2020

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Intra- and intercellular RNA interference in Arabidopsis thaliana requires components of the microRNA and heterochromatic silencing pathways

31 March 2020

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Retracted: Small RNA duplexes function as mobile silencing signals between plant cells.

31 March 2020

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An endogenous, systemic RNAi pathway in plants

31 March 2020

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Small Silencing RNAs in Plants Are Mobile and Direct Epigenetic Modification in Recipient Cells

31 March 2020

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Nuclear gene silencing directs reception of long-distance mRNA silencing in Arabidopsis

31 March 2020

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RNA polymerase V functions in Arabidopsis interphase heterochromatin organization independently of the 24-nt siRNA-directed DNA methylation pathway

31 March 2020

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A Pol V-mediated silencing, independent of RNA-directed DNA methylation, applies to 5S rDNA

31 March 2020

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Seasonal and developmental timing of flowering

31 March 2020

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RNA silencing genes control de novo DNA methylation

31 March 2020

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The Arabidopsis RNA-binding protein FCA requires a lysine-specific demethylase 1 homolog to downregulate FLC.

31 March 2020

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siRNAs targeting an intronic transposon in the regulation of natural flowering behavior in Arabidopsis

31 March 2020

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Small RNA-mediated chromatin silencing directed to the 3' region of the Arabidopsis gene encoding the developmental regulator, FLC.

31 March 2020

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The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene

31 March 2020

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Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis

31 March 2020

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Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

31 March 2020

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Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

31 March 2020

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Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis

31 March 2020

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A novel class of bacteria-induced small RNAs in Arabidopsis.

31 March 2020

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Proper regulation of a sperm-specific cis-nat-siRNA is essential for double fertilization in Arabidopsis

31 March 2020

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PolV(PolIVb) function in RNA-directed DNA methylation requires the conserved active site and an additional plant-specific subunit

31 March 2020

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A multistep process gave rise to RNA polymerase IV of land plants.

31 March 2020

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Arabidopsis thaliana RNA polymerase II subunits related to yeast and human RPB5

31 March 2020

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Extensive purification of a putative RNA polymerase I holoenzyme from plants that accurately initiates rRNA gene transcription in vitro

31 March 2020

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Dissociable Rpb4-Rpb7 subassembly of rna polymerase II binds to single-strand nucleic acid and mediates a post-recruitment step in transcription initiation.

31 March 2020

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Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways

31 March 2020

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The RNA polymerase II subunit Rpb4p mediates decay of a specific class of mRNAs

31 March 2020

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The Rpb7p subunit of yeast RNA polymerase II plays roles in the two major cytoplasmic mRNA decay mechanisms.

31 March 2020

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Transcription in the nucleus and mRNA decay in the cytoplasm are coupled processes

31 March 2020

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31 March 2020

Identifiers

DOI

10.1038/NRM3152

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Dimensions Publication ID

31 July 2017

1038476039

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