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Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease.
scientific article published on 7 June 2011
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Europe PubMed Central
PMC publication ID
3218810
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21658297%20AND%20SRC:MED&resulttype=core&format=json
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3 February 2020
review article
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Europe PubMed Central
title
Epigenomics of human embryonic stem cells and induced pluripotent stem cells: insights into pluripotency and implications for disease
(English)
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stated in
Europe PubMed Central
PMC publication ID
3218810
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21658297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
main subject
Human Induced Pluripotent Stem Cells
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based on heuristic
inferred from title
pluripotency
1 reference
based on heuristic
inferred from title
human embryonic stem cell
1 reference
based on heuristic
inferred from title
author
Alvaro Rada-Iglesias
series ordinal
1
1 reference
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Europe PubMed Central
PMC publication ID
3218810
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21658297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
author name string
Joanna Wysocka
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2
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Europe PubMed Central
PMC publication ID
3218810
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3 February 2020
publication date
7 June 2011
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Europe PubMed Central
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3218810
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3 February 2020
published in
Genome Medicine
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Europe PubMed Central
PMC publication ID
3218810
reference URL
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retrieved
3 February 2020
volume
3
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Europe PubMed Central
PMC publication ID
3218810
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21658297%20AND%20SRC:MED&resulttype=core&format=json
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3 February 2020
issue
6
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Europe PubMed Central
PMC publication ID
3218810
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21658297%20AND%20SRC:MED&resulttype=core&format=json
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3 February 2020
page(s)
36
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Europe PubMed Central
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3218810
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3 February 2020
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Genome-scale DNA methylation maps of pluripotent and differentiated cells
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DNA methylation landscapes: provocative insights from epigenomics
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Domain organization of human chromosomes revealed by mapping of nuclear lamina interactions
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Whole-genome mapping of histone H3 Lys4 and 27 trimethylations reveals distinct genomic compartments in human embryonic stem cells
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Dynamic regulation of nucleosome positioning in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Stem cells, the molecular circuitry of pluripotency and nuclear reprogramming
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
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27 July 2018
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
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27 July 2018
Multiple loci identified in a genome-wide association study of prostate cancer
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
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27 July 2018
Genome-wide association scan shows genetic variants in the FTO gene are associated with obesity-related traits
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
In vitro reprogramming of fibroblasts into a pluripotent ES-cell-like state
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Analysis of the vertebrate insulator protein CTCF-binding sites in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Chromatin modifications and their function
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Epigenetics: a landscape takes shape
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Chromatin in pluripotent embryonic stem cells and differentiation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
A bivalent chromatin structure marks key developmental genes in embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Chromatin signatures of pluripotent cell lines
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
From genome to epigenome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Ultrastructure of human embryonic stem cells and spontaneous and retinoic acid-induced differentiating cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Capturing chromosome conformation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Translating the Histone Code
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Non-CpG methylation is prevalent in embryonic stem cells and may be mediated by DNA methyltransferase 3a.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Mapping protein-DNA interactions in vivo with formaldehyde: evidence that histone H4 is retained on a highly transcribed gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
27 July 2018
Mapping and analysis of chromatin state dynamics in nine human cell types
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Reference Maps of human ES and iPS cell variation enable high-throughput characterization of pluripotent cell lines
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
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26 September 2018
Prospects of induced pluripotent stem cell technology in regenerative medicine
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
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26 September 2018
Pluripotency and cellular reprogramming: facts, hypotheses, unresolved issues
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
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26 September 2018
Targets and dynamics of promoter DNA methylation during early mouse development.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
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26 September 2018
Quantitative comparison of genome-wide DNA methylation mapping technologies.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Epigenetic memory in induced pluripotent stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
A map of open chromatin in human pancreatic islets
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Induced pluripotent stem cell technology for the study of human disease.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
iPS cells can support full-term development of tetraploid blastocyst-complemented embryos
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Nucleosome positioning and gene regulation: advances through genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Induction of pluripotent stem cells from fibroblast cultures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Induction of pluripotent stem cells from adult human fibroblasts by defined factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
High-resolution profiling of histone methylations in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
retrieved
26 September 2018
Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3218810
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26 September 2018
Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24.
1 reference
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https://api.crossref.org/works/10.1186%2FGM252
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21 January 2018
Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/21658297
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1186/GM252
1 reference
stated in
Europe PubMed Central
PMC publication ID
3218810
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21658297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
Dimensions Publication ID
1013158948
0 references
PMC publication ID
3218810
1 reference
stated in
Europe PubMed Central
PMC publication ID
3218810
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21658297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
PubMed publication ID
21658297
1 reference
stated in
Europe PubMed Central
PMC publication ID
3218810
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21658297%20AND%20SRC:MED&resulttype=core&format=json
retrieved
3 February 2020
ResearchGate publication ID
51205806
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