(Q35567467)

8 August 2017

title

Cotranscriptional spliceosome assembly and splicing are independent of the Prp40p WW domain (English)

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8 August 2017

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9

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8 August 2017

1

Janina Görnemann

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8 August 2017

Charlotte Barrandon

2

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8 August 2017

Katja Hujer

3

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8 August 2017

Berthold Rutz

4

1 reference

8 August 2017

Guillaume Rigaut

5

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8 August 2017

Kimberly M Kotovic

6

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8 August 2017

Céline Faux

7

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8 August 2017

Karla M Neugebauer

8

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8 August 2017

language of work or name

English

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publication date

21 October 2011

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8 August 2017

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8 August 2017

volume

17

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8 August 2017

issue

12

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8 August 2017

page(s)

2119-2129

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Pause locally, splice globally

8 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Splicing-dependent RNA polymerase pausing in yeast

12 July 2018

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Structure and function of the two tandem WW domains of the pre-mRNA splicing factor FBP21 (formin-binding protein 21)

12 July 2018

1 reference

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Arabidopsis thaliana PRP40s are RNA polymerase II C-terminal domain-associating proteins

12 July 2018

1 reference

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Crystal structure of human spliceosomal U1 snRNP at 5.5 Å resolution

12 July 2018

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The spliceosome: design principles of a dynamic RNP machine

12 July 2018

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Structure of the yeast Pml1 splicing factor and its integration into the RES complex

12 July 2018

1 reference

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Snu56p is required for Mer1p-activated meiotic splicing

12 July 2018

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The U1 snRNP-associated factor Luc7p affects 5' splice site selection in yeast and human

12 July 2018

1 reference

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Identification and characterization of RED120: a conserved PWI domain protein with links to splicing and 3'-end formation.

12 July 2018

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A genome-wide analysis indicates that yeast pre-mRNA splicing is predominantly posttranscriptional

12 July 2018

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Arrested yeast splicing complexes indicate stepwise snRNP recruitment during in vivo spliceosome assembly

12 July 2018

1 reference

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Cotranscriptional spliceosome assembly dynamics and the role of U1 snRNA:5'ss base pairing in yeast

12 July 2018

1 reference

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Proteomic analysis identifies a new complex required for nuclear pre-mRNA retention and splicing

12 July 2018

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Protein stoichiometry of a multiprotein complex, the human spliceosomal U1 small nuclear ribonucleoprotein: absolute quantification using isotope-coded tags and mass spectrometry

12 July 2018

1 reference

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The WW domain-containing proteins interact with the early spliceosome and participate in pre-mRNA splicing in vivo

12 July 2018

1 reference

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Cotranscriptional recruitment of the U1 snRNP to intron-containing genes in yeast

12 July 2018

1 reference

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Solution structure and ligand recognition of the WW domain pair of the yeast splicing factor Prp40

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The structure of an FF domain from human HYPA/FBP11

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Large-scale proteomic analysis of the human spliceosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The transcription elongation factor CA150 interacts with RNA polymerase II and the pre-mRNA splicing factor SF1

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The tandem affinity purification (TAP) method: a general procedure of protein complex purification

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Functional contacts with a range of splicing proteins suggest a central role for Brr2p in the dynamic control of the order of events in spliceosomes of Saccharomyces cerevisiae

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Functions of WW domains in the nucleus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The splicing factor, Prp40, binds the phosphorylated carboxyl-terminal domain of RNA polymerase II.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Protein-interaction modules that organize nuclear function: FF domains of CA150 bind the phosphoCTD of RNA polymerase II

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

A dual role for BBP/ScSF1 in nuclear pre-mRNA retention and splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

A generic protein purification method for protein complex characterization and proteome exploration

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Luc7p, a novel yeast U1 snRNP protein with a role in 5' splice site recognition

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Yeast ortholog of the Drosophila crooked neck protein promotes spliceosome assembly through stable U4/U6.U5 snRNP addition

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Epitope tagging of yeast genes using a PCR-based strategy: more tags and improved practical routines

12 July 2018

1 reference

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Transient interaction of BBP/ScSF1 and Mud2 with the splicing machinery affects the kinetics of spliceosome assembly

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Interaction of the U1 snRNP with nonconserved intronic sequences affects 5' splice site selection.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Mechanical devices of the spliceosome: motors, clocks, springs, and things

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Cross-intron bridging interactions in the yeast commitment complex are conserved in mammals

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The role of branchpoint-3' splice site spacing and interaction between intron terminal nucleotides in 3' splice site selection in Saccharomyces cerevisiae

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Mutations in U6 snRNA that alter splice site specificity: implications for the active site

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Yeast precursor mRNA processing protein PRP19 associates with the spliceosome concomitant with or just after dissociation of U4 small nuclear RNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

A U1 snRNA:pre-mRNA base pairing interaction is required early in yeast spliceosome assembly but does not uniquely define the 5' cleavage site.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Identification of functional U1 snRNA-pre-mRNA complexes committed to spliceosome assembly and splicing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Exon mutations uncouple 5' splice site selection from U1 snRNA pairing.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The yeast branchpoint sequence is not required for the formation of a stable U1 snRNA-pre-mRNA complex and is recognized in the absence of U2 snRNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The FF domains of yeast U1 snRNP protein Prp40 mediate interactions with Luc7 and Snu71.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Cotranscriptional spliceosome assembly occurs in a stepwise fashion and requires the cap binding complex

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Small nuclear ribonucleoprotein remodeling during catalytic activation of the spliceosome

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

New constructs and strategies for efficient PCR-based gene manipulations in yeast.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

An early hierarchic role of U1 small nuclear ribonucleoprotein in spliceosome assembly.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

The Structure of Prp40 FF1 Domain and Its Interaction with the crn-TPR1 Motif of Clf1 Gives a New Insight into the Binding Mode of FF Domains

24 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3222125

Involvement of U6 snRNA in 5' splice site selection

7 December 2018

1 reference

12 December 2020

A quantitative analysis of the effects of 5′ junction and TACTAAC box mutants and mutant combinations on yeast mRNA splicing

1 reference

12 December 2020

Some cis- and trans-acting mutants for splicing target pre-mRNA to the cytoplasm

1 reference

12 December 2020

U5 snRNA interacts with exon sequences at 5′ and 3′ splice sites

1 reference

12 December 2020

Splice site choice and splicing efficiency are positively influenced by pre-mRNA intramolecular base pairing in yeast

1 reference

12 December 2020

3' splice site recognition in S. cerevisiae does not require base pairing with U1 snRNA

1 reference

12 December 2020

The FF domain: a novel motif that often accompanies WW domains

1 reference

12 December 2020

https://api.fatcat.wiki/v0/release/x7dx645vkvfwdpdzj57bawgtri

Identifiers

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30 July 2022

release_x7dx645vkvfwdpdzj57bawgtri

Fatcat ID

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Fatcat

https://api.fatcat.wiki/v0/release/x7dx645vkvfwdpdzj57bawgtri

30 July 2022

https://api.fatcat.wiki/v0/release/x7dx645vkvfwdpdzj57bawgtri

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30 July 2022

https://api.fatcat.wiki/v0/release/x7dx645vkvfwdpdzj57bawgtri

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30 July 2022