(Q35572078)

25742016

8 August 2017

title

Comparative genomics of Cluster O mycobacteriophages (English)

1 reference

8 August 2017

1 reference

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

David W Bollivar

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Caroline Breitenberger

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Richard L Daniels

18

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Karen K Klyczek

32

1 reference

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5 June 2020

Deborah Moran

39

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

3

Deborah Jacobs-Sera

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

55

Graham F Hatfull

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

author name string

Steven G Cresawn

1

1 reference

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5 June 2020

Welkin H Pope

2

1 reference

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5 June 2020

Charles A Bowman

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Daniel A Russell

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Rebekah M Dedrick

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Sarah Ball

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Sandra H Burnett

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Kristen Butela

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Deanna Byrnes

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Sarah Carzo

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Kathleen A Cornely

16

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Trevor Cross

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

David Dunbar

19

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Ann M Findley

20

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Chris R Gissendanner

21

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Urszula P Golebiewska

22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Grant A Hartzog

23

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

J Robert Hatherill

24

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Lee E Hughes

25

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Chernoh S Jalloh

26

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Carla De Los Santos

27

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Kevin Ekanem

28

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Sphindile L Khambule

29

1 reference

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5 June 2020

Rodney A King

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Christina King-Smith

31

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Greg P Krukonis

33

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Christian Laing

34

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Jonathan S Lapin

35

1 reference

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5 June 2020

A Javier Lopez

36

1 reference

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5 June 2020

Sipho M Mkhwanazi

37

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Sally D Molloy

38

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Vanisha Munsamy

40

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Eddie Pacey

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Ruth Plymale

42

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Marianne Poxleitner

43

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Nathan Reyna

44

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Joel F Schildbach

45

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Joseph Stukey

46

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Sarah E Taylor

47

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Vassie C Ware

48

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Amanda L Wellmann

49

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Daniel Westholm

50

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Donna Wodarski

51

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Michelle Zajko

52

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Thabiso S Zikalala

53

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Roger W Hendrix

54

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

Tamarah Adair

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

language of work or name

English

0 references

publication date

5 March 2015

1 reference

8 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

issue

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

page(s)

e0118725

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

5 June 2020

copyright license

start time

5 March 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Genomics and proteomics of mycobacteriophage patience, an accidental tourist in the Mycobacterium neighborhood

1 reference

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Molecular Genetics of Mycobacteriophages.

12 July 2018

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Mutational analysis of the mycobacteriophage BPs promoter PR reveals context-dependent sequences for mycobacterial gene expression

12 July 2018

1 reference

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The delta domain of the HK97 major capsid protein is essential for assembly

12 July 2018

1 reference

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Mycobacterial RNA polymerase requires a U-tract at intrinsic terminators and is aided by NusG at suboptimal terminators

12 July 2018

1 reference

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HNH proteins are a widespread component of phage DNA packaging machines

12 July 2018

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A broadly implementable research course in phage discovery and genomics for first-year undergraduate students

12 July 2018

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The Structure of Xis Reveals the Basis for Filament Formation and Insight into DNA Bending within a Mycobacteriophage Intasome

12 July 2018

1 reference

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Whole-Genome Sequence of a Novel Species, Mycobacterium yongonense DSM 45126T.

12 July 2018

1 reference

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Functional domains of the HK97 capsid maturation protease and the mechanisms of protein encapsidation.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Functional requirements for bacteriophage growth: gene essentiality and expression in mycobacteriophage Giles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

On the nature of mycobacteriophage diversity and host preference

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

The Caulobacter crescentus phage phiCbK: genomics of a canonical phage

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Structure unifies the viral universe

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

The secret lives of mycobacteriophages

12 July 2018

1 reference

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Bacteriophage HK97 capsid assembly and maturation

12 July 2018

1 reference

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Complete genome sequences of 138 mycobacteriophages

12 July 2018

1 reference

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Cluster K mycobacteriophages: insights into the evolutionary origins of mycobacteriophage TM4

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Bacteriophages and their genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Phamerator: a bioinformatic tool for comparative bacteriophage genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

The structure of elongated viral capsids.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

MEME SUITE: tools for motif discovery and searching

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

5500 Phages examined in the electron microscope

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Mycobacteriophage exploit NHEJ to facilitate genome circularization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

The HHpred interactive server for protein homology detection and structure prediction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Origins of highly mosaic mycobacteriophage genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Virioplankton: Viruses in Aquatic Ecosystems

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

A hidden Markov model for predicting transmembrane helices in protein sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

SOSUI: classification and secondary structure prediction system for membrane proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Transcriptional silencing by the mycobacteriophage L5 repressor

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

12 July 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

12 July 2018

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0118725

Transcriptional regulation of repressor synthesis in mycobacteriophage L5.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

TopPred II: an improved software for membrane protein structure predictions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

A persistent untranslated sequence within bacteriophage T4 DNA topoisomerase gene 60.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Bacteriophage HK97 structure: wholesale covalent cross-linking between the major head shell subunits

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

The genomes and comparative genomics of Lactobacillus delbrueckii phages

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Gepard: a rapid and sensitive tool for creating dotplots on genome scale.

26 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4351075

Characterization of a prolate-headed bacteriophage of Lactobacillus delbrueckii subsp. lactis, and its DNA homology with isometric-headed phages

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25742016

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Genes for DNA cytosine methyltransferases and structural proteins, expressed during lytic growth by the phage phi H of the archaebacterium Halobacterium salinarium

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25742016

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0118725

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json

5 June 2020

25742016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25742016%20AND%20SRC:MED&resulttype=core&format=json