(Q35593966)

15 June 2018

title

Deep sequencing of cardiac microRNA-mRNA interactomes in clinical and experimental cardiomyopathy (English)

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15 June 2018

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1

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15 June 2018

author name string

Gerald W Dorn

series ordinal

2

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15 June 2018

language of work or name

English

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publication date

1 January 2015

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15 June 2018

Methods in Molecular Biology

published in

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15 June 2018

volume

1299

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15 June 2018

page(s)

27-49

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15 June 2018

Regulation of cardiac microRNAs by cardiac microRNAs

cites work

1 reference

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Epitranscriptional orchestration of genetic reprogramming is an emergent property of stress-regulated cardiac microRNAs.

12 July 2018

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12 July 2018

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Direct and indirect involvement of microRNA-499 in clinical and experimental cardiomyopathy

12 July 2018

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12 July 2018

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12 July 2018

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A human 3' miR-499 mutation alters cardiac mRNA targeting and function.

12 July 2018

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12 July 2018

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12 July 2018

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miRNAs control insulin content in pancreatic β-cells via downregulation of transcriptional repressors.

12 July 2018

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12 July 2018

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New methods for next generation sequencing based microRNA expression profiling

12 July 2018

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12 July 2018

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RISC RNA sequencing for context-specific identification of in vivo microRNA targets

12 July 2018

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12 July 2018

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12 July 2018

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Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

MicroRNA regulatory networks in cardiovascular development

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Deep mRNA sequencing for in vivo functional analysis of cardiac transcriptional regulators: application to Galphaq

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Evidence for coregulation of myocardial gene expression by MEF2 and NFAT in human heart failure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Ago-TNRC6 triggers microRNA-mediated decay by promoting two deadenylation steps

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Argonaute HITS-CLIP decodes microRNA-mRNA interaction maps

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Transcript length bias in RNA-seq data confounds systems biology

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

TopHat: discovering splice junctions with RNA-Seq

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Reciprocal regulation of myocardial microRNAs and messenger RNA in human cardiomyopathy and reversal of the microRNA signature by biomechanical support.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

CLIP: crosslinking and immunoprecipitation of in vivo RNA targets of RNA-binding proteins

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Dysregulation of microRNAs after myocardial infarction reveals a role of miR-29 in cardiac fibrosis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Mapping and quantifying mammalian transcriptomes by RNA-Seq

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Targeted deletion of Dicer in the heart leads to dilated cardiomyopathy and heart failure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

A biochemical approach to identifying microRNA targets

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

MicroRNA expression is required for pancreatic islet cell genesis in the mouse

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

MicroRNAs: powerful new regulators of heart disease and provocative therapeutic targets

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Role of Dicer and Drosha for endothelial microRNA expression and angiogenesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

A signature pattern of stress-responsive microRNAs that can evoke cardiac hypertrophy and heart failure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Mixed messages: transcription patterns in failing and recovering human myocardium.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5854147

Altered microRNA expression in human heart disease

26 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25836573

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Short structured RNAs with low GC content are selectively lost during extraction from a small number of cells

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25836573

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1007/978-1-4939-2572-8_3

1 reference

15 June 2018

PMC publication ID

5854147

1 reference

15 June 2018

PubMed publication ID

25836573

1 reference

15 June 2018