(Q35606699)

9 August 2017

title

Coarse-grained molecular dynamics simulations of a rotating bacterial flagellum (English)

1 reference

9 August 2017

5

Klaus Schulten

1 reference

9 August 2017

Anton Arkhipov

1

1 reference

9 August 2017

Peter L Freddolino

series ordinal

2

1 reference

9 August 2017

Katsumi Imada

series ordinal

3

1 reference

9 August 2017

Keiichi Namba

series ordinal

4

1 reference

9 August 2017

language of work or name

English

0 references

publication date

22 September 2006

1 reference

9 August 2017

number of pages

9

1 reference

inferred from page(s)

published in

Biophysical Journal

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9 August 2017

volume

91

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9 August 2017

issue

12

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9 August 2017

page(s)

4589-4597

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

9 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Assembly of lipoprotein particles revealed by coarse-grained molecular dynamics simulations.

12 July 2018

1 reference

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Switch interactions control energy frustration and multiple flagellar filament structures

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Coarse grained protein-lipid model with application to lipoprotein particles

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Scalable molecular dynamics with NAMD

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Allostery of actin filaments: molecular dynamics simulations and coarse-grained analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Exploring global motions and correlations in the ribosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Structure of the bacterial flagellar protofilament and implications for a switch for supercoiling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Real-time imaging of fluorescent flagellar filaments

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Structure and switching of bacterial flagellar filaments studied by X-ray fiber diffraction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Quasi- and nonequivalence in the structure of bacterial flagellar filament

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Short-range conformational energies, secondary structure propensities, and recognition of correct sequence-structure matches

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

VMD: visual molecular dynamics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

The structure of the R-type straight flagellar filament of Salmonella at 9 A resolution by electron cryomicroscopy.

12 July 2018

1 reference

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Purification of intact flagella from Escherichia coli and Bacillus subtilis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Polymerization of flagellin and polymorphism of flagella.

12 July 2018

1 reference

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Abrupt changes in flagellar rotation observed by laser dark-field microscopy

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Normal-to-curly flagellar transitions and their role in bacterial tumbling. Stabilization of an alternative quaternary structure by mechanical force

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Transition of bacterial flagella from helical to straight forms with different subunit arrangements

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Global ribosome motions revealed with elastic network model

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Structure of bacterial flagellar filaments at 11 A resolution: packing of the alpha-helices.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1779929

Change in direction of flagellar rotation is the basis of the chemotactic response in Escherichia coli

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16997871

12 December 2020

inferred from PubMed ID database lookup

Simulation of gel phase formation and melting in lipid bilayers using a coarse grained model

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16997871

12 December 2020

inferred from PubMed ID database lookup

Diversity and identity of mechanical properties of icosahedral viral capsids studied with elastic network normal mode analysis

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16997871

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1529/BIOPHYSJ.106.093443

1 reference

9 August 2017

1 reference

9 August 2017

1 reference