(Q36874437)

16 August 2017

Coarse grained protein-lipid model with application to lipoprotein particles (English)

1 reference

16 August 2017

1 reference

4

Klaus Schulten

1 reference

16 August 2017

Amy Y Shih

1

1 reference

16 August 2017

Anton Arkhipov

series ordinal

2

1 reference

16 August 2017

Peter L Freddolino

series ordinal

3

1 reference

16 August 2017

language of work or name

English

0 references

publication date

1 March 2006

1 reference

Journal of Physical Chemistry B

16 August 2017

1 reference

16 August 2017

110

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16 August 2017

8

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16 August 2017

3674-3684

1 reference

Thermotropic phase transition in soluble nanoscale lipid bilayers.

16 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Scalable molecular dynamics with NAMD

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Balancing energy and entropy: a minimalist model for the characterization of protein folding landscapes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Apolipoprotein structural organization in high density lipoproteins: belts, bundles, hinges and hairpins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Molecular structure of the lecithin ripple phase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Lipid bilayer perturbations around a transmembrane nanotube: a coarse grain molecular dynamics study

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Structure and dynamics of model pore insertion into a membrane

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Concentration effects of volatile anesthetics on the properties of model membranes: a coarse-grain approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Molecular dynamics simulations of discoidal bilayers assembled from truncated human lipoproteins

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Demonstration of a specific Escherichia coli SecY-signal peptide interaction

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

HDL: the metabolism, function, and therapeutic importance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Self‐assembly of single integral membrane proteins into soluble nanoscale phospholipid bilayers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Bridging microscopic and mesoscopic simulations of lipid bilayers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Comparative models for human apolipoprotein A-I bound to lipid in discoidal high-density lipoprotein particles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Interfacing molecular dynamics and macro-scale simulations for lipid bilayer vesicles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Single-molecule height measurements on microsomal cytochrome P450 in nanometer-scale phospholipid bilayer disks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Molecular belt models for the apolipoprotein A-I Paris and Milano mutations

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

29 September 2017

The Protein Data Bank

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Predicting the structure of apolipoprotein A-I in reconstituted high-density lipoprotein disks

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Crystal structure of truncated human apolipoprotein A-I suggests a lipid-bound conformation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Theory of protein folding: the energy landscape perspective

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

VMD: visual molecular dynamics

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Structural models of human apolipoprotein A-I.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

On computer-assisted analysis of biological sequences: proline punctuation, consensus sequences, and apolipoprotein repeats

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Conformational analysis of apolipoprotein A-I and E-3 based on primary sequence and circular dichroism.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Tension-induced fusion of bilayer membranes and vesicles.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Direct solubilization of heterologously expressed membrane proteins by incorporation into nanoscale lipid bilayers

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Investigation of the lipid domains and apolipoprotein orientation in reconstituted high density lipoproteins by fluorescence and IR methods

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Amphipathic helixes and plasma lipoproteins: thermodynamic and geometric considerations

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Optimal combination of theory and experiment for the characterization of the protein folding landscape of S6: how far can a minimalist model go?

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Homotropic cooperativity of monomeric cytochrome P450 3A4 in a nanoscale native bilayer environment

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Simulation of domain formation in DLPC-DSPC mixed bilayers.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Co-incorporation of heterologously expressed Arabidopsis cytochrome P450 and P450 reductase into soluble nanoscale lipid bilayers

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Directed self-assembly of monodisperse phospholipid bilayer Nanodiscs with controlled size

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Molecular dynamics simulations on discoidal HDL particles suggest a mechanism for rotation in the apo A-I belt model

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

Apolipoprotein A-I adopts a belt-like orientation in reconstituted high density lipoproteins

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2535944

A detailed molecular belt model for apolipoprotein A-I in discoidal high density lipoprotein

4 September 2018

1 reference

12 December 2020

Modulated phases in multicomponent fluid membranes

1 reference

12 December 2020

Insights into the molecular mechanism of membrane fusion from simulation: evidence for the association of splayed tails

1 reference

12 December 2020

Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles

1 reference

12 December 2020

Defined apolipoprotein A-I conformations in reconstituted high density lipoprotein discs

1 reference

12 December 2020

Structural analysis of apolipoprotein A-I: effects of amino- and carboxy-terminal deletions on the lipid-free structure

1 reference

12 December 2020

The structure of human lipoprotein A-I. Evidence for the "belt" model

1 reference

12 December 2020

Coarse-grained simulations of lipid bilayers

1 reference

12 December 2020

Simulation of gel phase formation and melting in lipid bilayers using a coarse grained model

1 reference

12 December 2020

A mass spectrometric determination of the conformation of dimeric apolipoprotein A-I in discoidal high density lipoproteins

1 reference

12 December 2020

Multiscale coupling of mesoscopic- and atomistic-level lipid bilayer simulations

1 reference

12 December 2020

The Mechanism of Vesicle Fusion as Revealed by Molecular Dynamics Simulations

1 reference

12 December 2020

Identifiers

DOI

10.1021/JP0550816

1 reference

16 August 2017

1 reference

16 August 2017

PubMed publication ID

16494423

1 reference