(Q35607806)

25887755

9 August 2017

title

Structure and function of a short LOV protein from the marine phototrophic bacterium Dinoroseobacter shibae (English)

1 reference

25887755

9 August 2017

main subject

Dinoroseobacter shibae

object named as

Dinoroseobacter shibae

1 reference

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Joachim Granzin

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Andreas M Stadler

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Ulrich Krauss

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Renu Batra-Safferling

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

author name string

Stephan Endres

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Franco Circolone

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Vera Svensson

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Esther Knieps-Grünhagen

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Astrid Wirtz

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Anneliese Cousin

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Petra Tielen

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Karl-Erich Jaeger

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

Dieter Willbold

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

publication date

14 February 2015

1 reference

9 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

volume

15

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

page(s)

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

9 June 2020

copyright license

start time

14 February 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

exact match

https://scigraph.springernature.com/pub.10.1186/s12866-015-0365-0

0 references

cites work

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Fluorescence imaging-based high-throughput screening of fast- and slow-cycling LOV proteins

27 July 2018

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Vitamin B12 regulates photosystem gene expression via the CrtJ antirepressor AerR in Rhodobacter capsulatus

27 July 2018

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The LOV protein of Xanthomonas citri subsp. citri plays a significant role in the counteraction of plant immune responses during citrus canker

27 July 2018

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The amino acids surrounding the flavin 7a-methyl group determine the UVA spectral features of a LOV protein

27 July 2018

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Light-Induced Subunit Dissociation by a Light–Oxygen–Voltage Domain Photoreceptor from Rhodobacter sphaeroides

27 July 2018

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Structural basis for the slow dark recovery of a full-length LOV protein from Pseudomonas putida

27 July 2018

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The evolution of flavin-binding photoreceptors: an ancient chromophore serving trendy blue-light sensors

27 July 2018

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Role of a short light, oxygen, voltage (LOV) domain protein in blue light- and singlet oxygen-dependent gene regulation in Rhodobacter sphaeroides.

27 July 2018

1 reference

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Structure of a Light-Activated LOV Protein Dimer That Regulates Transcription

27 July 2018

1 reference

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Function, structure and mechanism of bacterial photosensory LOV proteins.

27 July 2018

1 reference

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Transcriptional response of the photoheterotrophic marine bacterium Dinoroseobacter shibae to changing light regimes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Structural basis of photosensitivity in a bacterial light-oxygen-voltage/helix-turn-helix (LOV-HTH) DNA-binding protein

27 July 2018

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Engineered photoreceptors as novel optogenetic tools.

27 July 2018

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Optimization of data collection taking radiation damage into account

27 July 2018

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MolProbity: all-atom structure validation for macromolecular crystallography

27 July 2018

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Genetic tools for the investigation of Roseobacter clade bacteria

27 July 2018

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A cryptochrome-like protein is involved in the regulation of photosynthesis genes in Rhodobacter sphaeroides.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Mechanism-based tuning of a LOV domain photoreceptor

27 July 2018

1 reference

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In vivo mutational analysis of YtvA from Bacillus subtilis: mechanism of light activation of the general stress response

27 July 2018

1 reference

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The SWISS-MODEL Repository and associated resources

27 July 2018

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Bacterial bilin- and flavin-binding photoreceptors.

27 July 2018

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Raster3D: photorealistic molecular graphics

27 July 2018

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27 July 2018

https://api.crossref.org/works/10.1186%2FS12866-015-0365-0

N- and C-terminal flanking regions modulate light-induced signal transduction in the LOV2 domain of the blue light sensor phototropin 1 from Avena sativa

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

A photosensory two-component system regulates bacterial cell attachment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

A blue light inducible two-component signal transduction system in the plant pathogen Pseudomonas syringae pv. tomato

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Structural Basis for Light-dependent Signaling in the Dimeric LOV Domain of the Photosensor YtvA

27 July 2018

1 reference

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Blue-light-activated histidine kinases: two-component sensors in bacteria.

27 July 2018

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Inference of macromolecular assemblies from crystalline state

27 July 2018

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Conformational Switching in the Fungal Light Sensor Vivid

27 July 2018

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Structural characterization of flexible proteins using small-angle X-ray scattering

27 July 2018

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Blue light activates the sigmaB-dependent stress response of Bacillus subtilis via YtvA.

27 July 2018

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Environmental biology of the marine Roseobacter lineage

27 July 2018

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Isolation of aerobic anoxygenic photosynthetic bacteria from black smoker plume waters of the juan de fuca ridge in the pacific ocean

27 July 2018

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The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

27 July 2018

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Initial characterization of a blue-light sensing, phototropin-related protein from Pseudomonas putida: a paradigm for an extended LOV construct

27 July 2018

1 reference

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Dinoroseobacter shibae gen. nov., sp. nov., a new aerobic phototrophic bacterium isolated from dinoflagellates

27 July 2018

1 reference

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Coot: model-building tools for molecular graphics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Listening to the blue: the time-resolved thermodynamics of the bacterial blue-light receptor YtvA and its isolated LOV domain

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Crystal structures and molecular mechanism of a light-induced signaling switch: The Phot-LOV1 domain from Chlamydomonas reinhardtii

27 July 2018

1 reference

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PHENIX: building new software for automated crystallographic structure determination

27 July 2018

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27 July 2018

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Photoexcited Structure of a Plant Photoreceptor Domain Reveals a Light-Driven Molecular Switch

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Domain structure, oligomeric state, and mutational analysis of PpsR, the Rhodobacter sphaeroides repressor of photosystem gene expression.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Molecular genetic analysis suggesting interactions between AppA and PpsR in regulation of photosynthesis gene expression in Rhodobacter sphaeroides 2.4.1.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Light regulates motility, attachment and virulence in the plant pathogen Pseudomonas syringae pv tomato DC3000.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Modeling the functioning of YtvA in the general stress response in Bacillus subtilis.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Light regulation of swarming motility in Pseudomonas syringae integrates signaling pathways mediated by a bacteriophytochrome and a LOV protein

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

The blue-light receptor YtvA from Bacillus subtilis is permanently incorporated into the stressosome independent of the illumination state

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Interaction of two photoreceptors in the regulation of bacterial photosynthesis genes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Overview of the CCP4 suite and current developments

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Modulation of the photocycle of a LOV domain photoreceptor by the hydrogen-bonding network.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

A novel T7 RNA polymerase dependent expression system for high-level protein production in the phototrophic bacterium Rhodobacter capsulatus

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

An improved Escherichia coli donor strain for diparental mating.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Higher plants use LOV to perceive blue light.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Light Activation of the LOV Protein Vivid Generates a Rapidly Exchanging Dimer † ‡

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Steric interactions stabilize the signaling state of the LOV2 domain of phototropin 1.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

A haem cofactor is required for redox and light signalling by the AppA protein of Rhodobacter sphaeroides.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

A base-catalyzed mechanism for dark state recovery in the Avena sativa phototropin-1 LOV2 domain.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Phototropin LOV domains exhibit distinct roles in regulating photoreceptor function.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

A single flavoprotein, AppA, integrates both redox and light signals in Rhodobacter sphaeroides.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

First evidence for phototropin-related blue-light receptors in prokaryotes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4335406

From Plant Infectivity to Growth Patterns: The Role of Blue-Light Sensing in the Prokaryotic World

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12866-015-0365-0

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12866-015-0365-0

Role of GlnB and GlnK in ammonium control of both nitrogenase systems in the phototrophic bacterium Rhodobacter capsulatus

21 January 2018

1 reference

12 December 2020

Mutual Exchange of Kinetic Properties by Extended Mutagenesis in Two Short LOV Domain Proteins fromPseudomonas putida

1 reference

12 December 2020

Beyond catalysis: vitamin B12 as a cofactor in gene regulation

1 reference

12 December 2020

Discovery of the first light-dependent protochlorophyllide oxidoreductase in anoxygenic phototrophic bacteria

1 reference

12 December 2020

10.1186/S12866-015-0365-0

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

9 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json

9 June 2020

25887755

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25887755%20AND%20SRC:MED&resulttype=core&format=json