(Q35611968)

9 August 2017

title

Deciphering poxvirus gene expression by RNA sequencing and ribosome profiling (English)

1 reference

9 August 2017

8

Bernard Moss

1 reference

9 August 2017

Zhilong Yang

1

1 reference

9 August 2017

Shuai Cao

2

1 reference

9 August 2017

Craig A Martens

3

1 reference

9 August 2017

Stephen F Porcella

4

1 reference

9 August 2017

Zhi Xie

5

1 reference

9 August 2017

Ming Ma

6

1 reference

9 August 2017

Ben Shen

7

1 reference

9 August 2017

language of work or name

English

0 references

publication date

22 April 2015

1 reference

9 August 2017

1 reference

9 August 2017

volume

89

1 reference

9 August 2017

issue

13

1 reference

9 August 2017

page(s)

6874-6886

1 reference

Quantitative profiling of initiating ribosomes in vivo

9 August 2017

cites work

1 reference

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12 July 2018

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12 July 2018

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Cascade regulation of vaccinia virus gene expression is modulated by multistage promoters

12 July 2018

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Poxviruses and the evolution of host range and virulence

12 July 2018

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Direct formation of vaccinia virus membranes from the endoplasmic reticulum in the absence of the newly characterized L2-interacting protein A30.5.

12 July 2018

1 reference

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Vaccinia virus immune evasion: mechanisms, virulence and immunogenicity

12 July 2018

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Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs

12 July 2018

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High-resolution view of bacteriophage lambda gene expression by ribosome profiling

12 July 2018

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TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

12 July 2018

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Decoding human cytomegalovirus

12 July 2018

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Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

12 July 2018

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An atlas of the Epstein-Barr virus transcriptome and epigenome reveals host-virus regulatory interactions

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Pervasive initiation and 3'-end formation of poxvirus postreplicative RNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes

12 July 2018

1 reference

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Expression profiling of the intermediate and late stages of poxvirus replication

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Genome-wide analysis of the 5' and 3' ends of vaccinia virus early mRNAs delineates regulatory sequences of annotated and anomalous transcripts

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Redefining the genetics of murine gammaherpesvirus 68 via transcriptome-based annotation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Simultaneous high-resolution analysis of vaccinia virus and host cell transcriptomes by deep RNA sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

MochiView: versatile software for genome browsing and DNA motif analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Inhibition of eukaryotic translation elongation by cycloheximide and lactimidomycin

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Characterization of a newly identified 35-amino-acid component of the vaccinia virus entry/fusion complex conserved in all chordopoxviruses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Vaccinia virus WR53.5/F14.5 protein is a new component of intracellular mature virus and is important for calcium-independent cell adhesion and vaccinia virus virulence in mice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Comparative analysis of viral gene expression programs during poxvirus infection: a transcriptional map of the vaccinia and monkeypox genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Kinetic analysis of a complete poxvirus transcriptome reveals an immediate-early class of genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

The vaccinia virus H5R gene encodes late gene transcription factor 4: purification, cloning, and overexpression.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Characterization and temporal regulation of mRNAs encoded by vaccinia virus intermediate-stage genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Complete nucleotide sequences of two adjacent early vaccinia virus genes located within the inverted terminal repetition.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

The Mechanism by which Cycloheximide and Related Glutarimide Antibiotics Inhibit Peptide Synthesis on Reticulocyte Ribosomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

In vitro mutagenesis of the promoter region for a vaccinia virus gene: evidence for tandem early and late regulatory signals

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Nucleotide sequence and genetic map of the 16-kb vaccinia virus HindIII D fragment

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Discontinuous transcription or RNA processing of vaccinia virus late messengers results in a 5' poly(A) leader

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Vaccinia virus produces late mRNAs by discontinuous synthesis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Conserved TAAATG sequence at the transcriptional and translational initiation sites of vaccinia virus late genes deduced by structural and functional analysis of the HindIII H genome fragment.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Structure of the transcription initiation and termination sequences of seven early genes in the vaccinia virus HindIII D fragment

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Transcription and translation mapping of the 13 genes in the vaccinia virus HindIII D fragment

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Messenger RNAs of a strongly-expressed late gene of cowpox virus contain 5'-terminal poly(A) sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Mapping and insertional mutagenesis of a vaccinia virus gene encoding a 13,800-Da secreted protein

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Capped poly(A) leaders of variable lengths at the 5' ends of vaccinia virus late mRNAs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Identification of the vaccinia virus gene encoding an 18-kilodalton subunit of RNA polymerase and demonstration of a 5' poly(A) leader on its early transcript.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

The complete DNA sequence of vaccinia virus

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

DNA sequence of the gene encoding a major secreted protein of vaccinia virus, strain Lister

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Characterization of a 7-kilodalton subunit of vaccinia virus DNA-dependent RNA polymerase with structural similarities to the smallest subunit of eukaryotic RNA polymerase II.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Regulation of translation in eukaryotic systems

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Purification of mRNA guanylyltransferase and mRNA (guanine-7-) methyltransferase from vaccinia virions

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Sequence complexity and relative abundance of vaccinia virus mRNA's synthesized in vivo and in vitro

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Inhibition of Translation in Eukaryotic Systems by Harringtonine

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Methylated nucleotides block 5'-terminus of vaccinia virus messenger RNA.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Ribosome profiling: new views of translation, from single codons to genome scale

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Ribonucleic acid synthesis in vaccinia virus. II. Synthesis of polyriboadenylic acid

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4468498

Polyadenylate Polymerase from Vaccinia Virions

23 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25903347

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Preparation of cell cultures and vaccinia virus stocks

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25903347

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/JVI.00528-15

1 reference

9 August 2017

1 reference

9 August 2017

1 reference