(Q35614128)

9 August 2017

title

A pooling-based approach to mapping genetic variants associated with DNA methylation (English)

1 reference

9 August 2017

0 references

Lisa M McEwen

4

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Michael Kobor

object named as

Michael S Kobor

5

0 references

author name string

Irene M Kaplow

1

1 reference

9 August 2017

Julia L MacIsaac

2

1 reference

9 August 2017

Sarah M Mah

3

1 reference

9 August 2017

Hunter B Fraser

6

1 reference

9 August 2017

publication date

24 April 2015

1 reference

9 August 2017

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9 August 2017

volume

25

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9 August 2017

issue

6

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9 August 2017

page(s)

907-917

1 reference

Genomic variation. Impact of regulatory variation from RNA to protein

9 August 2017

cites work

1 reference

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12 July 2018

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Methylation QTLs are associated with coordinated changes in transcription factor binding, histone modifications, and gene expression levels

12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue

12 July 2018

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The relationship between DNA methylation, genetic and expression inter-individual variation in untransformed human fibroblasts

12 July 2018

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Methylation quantitative trait loci (meQTLs) are consistently detected across ancestry, developmental stage, and tissue type

12 July 2018

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Genome-wide methylation patterns provide insight into differences in breast tumor biology between American women of African and European ancestry

12 July 2018

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The role of epigenetic modification in tumorigenesis and progression of pituitary adenomas: a systematic review of the literature

12 July 2018

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Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions.

12 July 2018

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12 July 2018

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Global analysis of DNA methylation variation in adipose tissue from twins reveals links to disease-associated variants in distal regulatory elements

12 July 2018

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Identification of genetic variants that affect histone modifications in human cells

12 July 2018

1 reference

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Extensive variation in chromatin states across humans

12 July 2018

1 reference

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Coordinated effects of sequence variation on DNA binding, chromatin structure, and transcription

12 July 2018

1 reference

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Transcriptome and genome sequencing uncovers functional variation in humans

12 July 2018

1 reference

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Considerations for normalization of DNA methylation data by Illumina 450K BeadChip assay in population studies.

12 July 2018

1 reference

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Charting a dynamic DNA methylation landscape of the human genome

12 July 2018

1 reference

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DNA methylation contributes to natural human variation

12 July 2018

1 reference

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Methylomics of gene expression in human monocytes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

DNA methylation, genotype and gene expression: who is driving and who is along for the ride?

12 July 2018

1 reference

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Normalizing RNA-sequencing data by modeling hidden covariates with prior knowledge

12 July 2018

1 reference

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Global epigenomic reconfiguration during mammalian brain development

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

SNPs located at CpG sites modulate genome-epigenome interaction

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Genome-wide variation of cytosine modifications between European and African populations and the implications for complex traits

12 July 2018

1 reference

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Passive and active DNA methylation and the interplay with genetic variation in gene regulation

12 July 2018

1 reference

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Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population.

12 July 2018

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Identification of CpG-SNPs associated with type 2 diabetes and differential DNA methylation in human pancreatic islets

12 July 2018

1 reference

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The presence of methylation quantitative trait loci indicates a direct genetic influence on the level of DNA methylation in adipose tissue

12 July 2018

1 reference

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DNA methylation: roles in mammalian development

12 July 2018

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12 July 2018

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Interpreting noncoding genetic variation in complex traits and human disease

12 July 2018

1 reference

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Factors underlying variable DNA methylation in a human community cohort

12 July 2018

1 reference

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Comprehensive molecular portraits of human breast tumours

12 July 2018

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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

12 July 2018

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Architecture of the human regulatory network derived from ENCODE data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

The accessible chromatin landscape of the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

An integrated encyclopedia of DNA elements in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Functions of DNA methylation: islands, start sites, gene bodies and beyond

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Epigenome-wide scans identify differentially methylated regions for age and age-related phenotypes in a healthy ageing population

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

ChromHMM: automating chromatin-state discovery and characterization

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Population-specificity of human DNA methylation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Dynamics of DNA methylation in aging and Alzheimer's disease

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

DNase I sensitivity QTLs are a major determinant of human expression variation

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Enrichment of cis-regulatory gene expression SNPs and methylation quantitative trait loci among bipolar disorder susceptibility variants.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Batch effect correction for genome-wide methylation data with Illumina Infinium platform

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

OCT4 establishes and maintains nucleosome-depleted regions that provide additional layers of epigenetic regulation of its target genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

DNA methylation status predicts cell type-specific enhancer activity.

12 July 2018

1 reference

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Genotype and SNP calling from next-generation sequencing data

12 July 2018

1 reference

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12 July 2018

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DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

12 July 2018

1 reference

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A map of human genome variation from population-scale sequencing

12 July 2018

1 reference

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The NIH Roadmap Epigenomics Mapping Consortium

12 July 2018

1 reference

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Tackling the widespread and critical impact of batch effects in high-throughput data

12 July 2018

1 reference

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Abundant quantitative trait loci exist for DNA methylation and gene expression in human brain

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome

12 July 2018

1 reference

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CpG islands influence chromatin structure via the CpG-binding protein Cfp1.

12 July 2018

1 reference

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Dissection of genetically complex traits with extremely large pools of yeast segregants

12 July 2018

1 reference

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Understanding mechanisms underlying human gene expression variation with RNA sequencing

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Redefining CpG islands using hidden Markov models

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Human DNA methylomes at base resolution show widespread epigenomic differences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

A species-generalized probabilistic model-based definition of CpG islands

12 July 2018

1 reference

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Genome-scale DNA methylation maps of pluripotent and differentiated cells

12 July 2018

1 reference

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A second generation human haplotype map of over 3.1 million SNPs

12 July 2018

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Genome-wide maps of chromatin state in pluripotent and lineage-committed cells

12 July 2018

1 reference

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Adjusting batch effects in microarray expression data using empirical Bayes methods

12 July 2018

1 reference

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Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

12 July 2018

1 reference

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DNA hypermethylation in tumorigenesis: epigenetics joins genetics

12 July 2018

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Alterations in DNA methylation: a fundamental aspect of neoplasia

12 July 2018

1 reference

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Methylation of the hypoxanthine phosphoribosyltransferase locus on the human X chromosome: implications for X-chromosome inactivation

12 July 2018

1 reference

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Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations

12 July 2018

1 reference

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A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Patterns of population epigenomic diversity.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

High density DNA methylation array with single CpG site resolution

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4448686

Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/25910490

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1101/GR.183749.114

1 reference

9 August 2017

1 reference

9 August 2017

1 reference