(Q35619596)

9 August 2017

title

Retrogenes in rice (Oryza sativa L. ssp. japonica) exhibit correlated expression with their source genes (English)

1 reference

9 August 2017

Oryza sativa

1 reference

Hiroshi Mizuno

2

0 references

Takeshi Itoh

object named as

Takeshi Itoh

9

0 references

Brandon S Gaut

10

object named as

Brandon S Gaut

1 reference

9 August 2017

Hiroaki Sakai

1

1 reference

9 August 2017

Yoshihiro Kawahara

3

1 reference

9 August 2017

Hironobu Wakimoto

4

1 reference

9 August 2017

Hiroshi Ikawa

5

1 reference

9 August 2017

Hiroyuki Kawahigashi

6

1 reference

9 August 2017

Hiroyuki Kanamori

7

1 reference

9 August 2017

Takashi Matsumoto

8

1 reference

9 August 2017

publication date

31 October 2011

1 reference

Genome Biology and Evolution

9 August 2017

published in

1 reference

9 August 2017

volume

3

1 reference

9 August 2017

page(s)

1357-1368

1 reference

Creative Commons Attribution-NonCommercial 3.0 Unported

9 August 2017

copyright license

start time

3 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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12 July 2018

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12 July 2018

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12 July 2018

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12 July 2018

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Importance of lineage-specific expansion of plant tandem duplicates in the adaptive response to environmental stimuli

12 July 2018

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Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positive Darwinian selection

12 July 2018

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Birth and rapid subcellular adaptation of a hominoid-specific CDC14 protein

12 July 2018

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Evolutionary origin of regulatory regions of retrogenes in Drosophila

12 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes

12 July 2018

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Retrotransposition as a source of new promoters

12 July 2018

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The Rice Annotation Project Database (RAP-DB): 2008 update

12 July 2018

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Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families

12 July 2018

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A genome-wide transcriptional activity survey of rice transposable element-related genes

12 July 2018

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Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila

12 July 2018

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RetrOryza: a database of the rice LTR-retrotransposons

12 July 2018

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12 July 2018

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12 July 2018

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Evolutionary fate of retroposed gene copies in the human genome

12 July 2018

1 reference

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Emergence of young human genes after a burst of retroposition in primates

12 July 2018

1 reference

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The map-based sequence of the rice genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Computational identification of 69 retroposons in Arabidopsis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

A gene expression map of Arabidopsis thaliana development

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

The Genomes of Oryza sativa: a history of duplications

12 July 2018

1 reference

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HyPhy: hypothesis testing using phylogenies

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

cis-Regulatory and protein evolution in orthologous and duplicate genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Rapid recent growth and divergence of rice nuclear genomes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Extensive gene traffic on the mammalian X chromosome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Divergence in the spatial pattern of gene expression between human duplicate genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Multiple sequence alignment with the Clustal series of programs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Detection of genes with tissue-specific expression patterns using Akaike's information criterion procedure

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Retroposed new genes out of the X in Drosophila

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Rapid divergence in expression between duplicate genes inferred from microarray data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Splitting pairs: the diverging fates of duplicated genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Identification and analysis of over 2000 ribosomal protein pseudogenes in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

The evolutionary fate and consequences of duplicate genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Human LINE retrotransposons generate processed pseudogenes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Twilight zone of protein sequence alignments

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Positive Darwinian selection after gene duplication in primate ribonuclease genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Comparison of DNA sequences with protein sequences.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Natural Selection and the Origin of jingwei , a Chimeric Processed Functional Gene in Drosophila

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Processed pseudogenes: characteristics and evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Extensive structural renovation of retrogenes in the evolution of the Populus genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Origins of new male germ-line functions from X-derived autosomal retrogenes in the mouse.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

High rate of chimeric gene origination by retroposition in plant genomes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Mining EST databases to resolve evolutionary events in major crop species

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Ectopic expression of the maize homeobox gene liguleless3 alters cell fates in the leaf

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Expression of a rice homeobox gene causes altered morphology of transgenic plants

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3240961

Establishment of a high efficiency Agrobacterium-mediated transformation system of rice (Oryza sativa L.).

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22042334

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

AtMetExpress development: a phytochemical atlas of Arabidopsis development

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22042334

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/GBE/EVR111

1 reference

9 August 2017

1 reference

9 August 2017

1 reference