(Q35629020)

9 August 2017

title

Experimental evolution of an RNA virus in wild birds: evidence for host-dependent impacts on population structure and competitive fitness (English)

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9 August 2017

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experimental evolution

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Jennifer E Beane

12

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Aaron C. Brault

15

object named as

Aaron C Brault

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9 August 2017

16

Gregory D Ebel

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9 August 2017

9

Nisha K Duggal

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1

Nathan D Grubaugh

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9 August 2017

13

Richard A Bowen

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3

Doug E Brackney

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9 August 2017

5

Joseph R Fauver

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9 August 2017

14

William C Black

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9 August 2017

2

Darci R Smith

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9 August 2017

Angela M Bosco-Lauth

4

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9 August 2017

Corey L Campbell

6

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9 August 2017

Todd A Felix

7

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9 August 2017

Hannah Romo

8

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Elizabeth A Dietrich

10

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Tyler Eike

11

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language of work or name

English

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publication date

20 May 2015

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9 August 2017

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9 August 2017

volume

11

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9 August 2017

issue

5

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9 August 2017

page(s)

e1004874

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Creative Commons CC0 License

9 August 2017

copyright license

start time

20 May 2015

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April 2022 Public Data File from Crossref

copyright status

copyrighted, dedicated to the public domain by copyright holder

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cites work

Evidence for co-evolution of West Nile Virus and house sparrows in North America

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Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

27 July 2018

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Costs and benefits of mutational robustness in RNA viruses

27 July 2018

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Host competence and helicase activity differences exhibited by West Nile viral variants expressing NS3-249 amino acid polymorphisms

27 July 2018

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Arrival of chikungunya virus in the new world: prospects for spread and impact on public health

27 July 2018

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MOSAIK: a hash-based algorithm for accurate next-generation sequencing short-read mapping

27 July 2018

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Experimental infections of wild birds with West Nile virus

27 July 2018

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Inference with viral quasispecies diversity indices: clonal and NGS approaches

27 July 2018

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Replication cycle and molecular biology of the West Nile virus

27 July 2018

1 reference

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V-Phaser 2: variant inference for viral populations

27 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

West Nile virus infection in American Robins: new insights on dose response

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Epidemiology of human infections with avian influenza A(H7N9) virus in China.

27 July 2018

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Phylodynamic analysis of the emergence and epidemiological impact of transmissible defective dengue viruses

27 July 2018

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Probabilistic inference of viral quasispecies subject to recombination

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

The effect of strand bias in Illumina short-read sequencing data

27 July 2018

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Genome-wide patterns of intrahuman dengue virus diversity reveal associations with viral phylogenetic clade and interhost diversity

27 July 2018

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Internally deleted WNV genomes isolated from exotic birds in New Mexico: function in cells, mosquitoes, and mice

27 July 2018

1 reference

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VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

West Nile virus experimental evolution in vivo and the trade-off hypothesis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Defective interfering viral particles in acute dengue infections

27 July 2018

1 reference

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Population variation of West Nile virus confers a host-specific fitness benefit in mosquitoes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Crow deaths caused by West Nile virus during winter

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

A single mutation in chikungunya virus affects vector specificity and epidemic potential

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Mosquitoes inoculate high doses of West Nile virus as they probe and feed on live hosts

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

A single positively selected West Nile viral mutation confers increased virogenesis in American crows

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

A global perspective on the epidemiology of West Nile virus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Relative quantitation of virus population size in mixed genotype infections using sequencing chromatograms

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

The West Nile virus mutant spectrum is host-dependant and a determinant of mortality in mice

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Resistance to Alpha/Beta Interferon Is a Determinant of West Nile Virus Replication Fitness and Virulence

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

West Nile virus epidemics in North America are driven by shifts in mosquito feeding behavior

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Long-term transmission of defective RNA viruses in humans and Aedes mosquitoes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Avian hosts for West Nile virus in St. Tammany Parish, Louisiana, 2002.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Alpha/beta interferon protects against lethal West Nile virus infection by restricting cellular tropism and enhancing neuronal survival

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Variation in virulence of West Nile virus strains for house sparrows (Passer domesticus).

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Differential virulence of West Nile strains for American crows

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Genetic and phenotypic variation of West Nile virus in New York, 2000-2003.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Evolutionary transition toward defective RNAs that are infectious by complementation.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Co-infection weakens selection against epistatic mutations in RNA viruses

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Experimental infection of North American birds with the New York 1999 strain of West Nile virus

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Infectious cDNA clone of the epidemic west nile virus from New York City

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Early changes in hepatitis C viral quasispecies during interferon therapy predict the therapeutic outcome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Rates of molecular evolution in RNA viruses: a quantitative phylogenetic analysis

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

West Nile Virus Infection in Birds and Mosquitoes, New York State, 2000

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Partial Genetic Characterization of West Nile Virus Strains, New York State, 2000

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Quantifying population genetic differentiation from next-generation sequencing data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Full-length transcriptome assembly from RNA-Seq data without a reference genome

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

RNAi Targeting of West Nile Virus in Mosquito Midguts Promotes Virus Diversification

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Phylogenetic analysis of North American West Nile virus isolates, 2001-2004: evidence for the emergence of a dominant genotype

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Genetic variation in West Nile virus from naturally infected mosquitoes and birds suggests quasispecies structure and strong purifying selection

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Early changes in quasispecies repertoire in HIV-infected infants: correlation with disease progression

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Hitchhiking under positive Darwinian selection

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

Statistical tests of neutrality of mutations

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4439088

10.1371/JOURNAL.PPAT.1004874

25 September 2018

Identifiers

DOI

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9 August 2017

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9 August 2017

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