(Q35632594)

English

Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast

scientific article published on 22 August 2011

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast (English)

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

6

object named as

Jürg Bähler

0 references

author name string

Brian T Wilhelm

1

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Samuel Marguerat

2

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Sofia Aligianni

3

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Sandra Codlin

4

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Stephen Watt

5

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

Jürg Bähler

6

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

publication date

22 August 2011

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

12

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

8

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

R82

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

https://scigraph.springernature.com/pub.10.1186/gb-2011-12-8-r82

0 references

Epigenetics in alternative pre-mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Splicing-dependent RNA polymerase pausing in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Mapping of long-range associations throughout the fission yeast genome reveals global genome organization linked to transcriptional regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Nucleosome depletion at yeast terminators is not intrinsic and can occur by a transcriptional mechanism linked to 3'-end formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Biased chromatin signatures around polyadenylation sites and exons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

"Cotranscriptionality": the transcription elongation complex as a nexus for nuclear transactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

A model for all genomes: the role of transcription factories

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Nucleosomes are well positioned in exons and carry characteristic histone modifications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Pre-mRNA processing reaches back to transcription and ahead to translation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Functional integration of transcriptional and RNA processing machineries

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Dynamic interactions between the promoter and terminator regions of the mammalian BRCA1 gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Splicing, transcription, and chromatin: a ménage à trois

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

RNA polymerase II pauses and associates with pre-mRNA processing factors at both ends of genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

A chromatin landmark and transcription initiation at most promoters in human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Myc dynamically and preferentially relocates to a transcription factory occupied by Igh

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

The complex language of chromatin regulation during transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

FAIRE (Formaldehyde-Assisted Isolation of Regulatory Elements) isolates active regulatory elements from human chromatin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Pause sites promote transcriptional termination of mammalian RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Linking splicing to Pol II transcription stabilizes pre-mRNAs and influences splicing patterns

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

A high-resolution map of transcription in the yeast genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Exon tethering in transcription by RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Histone H3 K36 methylation is associated with transcription elongation in Schizosaccharomyces pombe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Multiple links between transcription and splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Active genes dynamically colocalize to shared sites of ongoing transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Gene loops juxtapose promoters and terminators in yeast

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

The use of chromatin immunoprecipitation assays in genome-wide analyses of histone modifications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

A slow RNA polymerase II affects alternative splicing in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Methylation of histone H3 by Set2 in Saccharomyces cerevisiae is linked to transcriptional elongation by RNA polymerase II

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

A pause site for RNA polymerase II is associated with termination of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245620

27 July 2018

A network of multiple regulatory layers shapes gene expression in fission yeast.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Differential chromatin marking of introns and expressed exons by H3K36me3.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Isolation of active regulatory elements from eukaryotic chromatin using FAIRE (Formaldehyde Assisted Isolation of Regulatory Elements).

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Evidence for nucleosome depletion at active regulatory regions genome-wide

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Genome-scale identification of nucleosome positions in S. cerevisiae

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Nucleosome positioning as a determinant of exon recognition

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Set2 is a nucleosomal histone H3-selective methyltransferase that mediates transcriptional repression.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

In vivo dynamics of RNA polymerase II transcription.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

A pause to splice.

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Transcription factories are nuclear subcompartments that remain in the absence of transcription

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Chromatin organization marks exon-intron structure

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Global Analysis of Nascent RNA Reveals Transcriptional Pausing in Terminal Exons

1 reference

https://api.crossref.org/works/10.1186%2FGB-2011-12-8-R82

21 January 2018

Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae

1 reference

https://pubmed.ncbi.nlm.nih.gov/21859475

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cotranscriptional coupling of splicing factor recruitment and precursor messenger RNA splicing in mammalian cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/21859475

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/GB-2011-12-8-R82

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q35632594&oldid=1524607839"