(Q35664024)

9 August 2017

4 references

18 October 2020

25 November 2020

30 April 2021

Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment (English)

1 reference

9 August 2017

1 reference

18 October 2020

1 reference

25 November 2020

1 reference

30 April 2021

1

1 reference

9 August 2017

5

Jennifer Harrow

0 references

Adam Frankish

4

object named as

Adam Frankish

1 reference

9 August 2017

6

Uwe Ohler

1 reference

9 August 2017

Michael R Brent

2

1 reference

9 August 2017

Randall H Brown

3

1 reference

9 August 2017

Victor V Solovyev

7

1 reference

9 August 2017

Sin Lam Tan

8

1 reference

9 August 2017

language of work or name

1 reference

7 August 2006

4 references

9 August 2017

18 October 2020

25 November 2020

30 April 2021

4 references

9 August 2017

18 October 2020

25 November 2020

30 April 2021

7 Suppl 1

1 reference

9 August 2017

page(s)

S3.1-13

1 reference

Pairagon+N-SCAN_EST: a model-based gene annotation pipeline

9 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

GENCODE: producing a reference annotation for ENCODE

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

EGASP: the human ENCODE Genome Annotation Assessment Project

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Genome-wide analysis of mammalian promoter architecture and evolution

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

DBTSS: DataBase of Human Transcription Start Sites, progress report 2006.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Antisense transcription in the mammalian transcriptome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

The transcriptional landscape of the mammalian genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Direct isolation and identification of promoters in the human genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Begin at the beginning: predicting genes with 5' UTRs

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

The ENCODE (ENCyclopedia Of DNA Elements) Project

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Integrative annotation of 21,037 human genes validated by full-length cDNA clones

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

DBTSS, DataBase of Transcriptional Start Sites: progress report 2004.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Dragon gene start finder: an advanced system for finding approximate locations of the start of gene transcriptional units

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Dragon Gene Start Finder identifies approximate locations of the 5' ends of genes

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

PromH: Promoters identification using orthologous genomic sequences

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

The RNA polymerase II core promoter

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Computational analysis of core promoters in the Drosophila genome

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Consensus promoter identification in the human genome utilizing expressed gene markers and gene modeling

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Computational detection and location of transcription start sites in mammalian genomic DNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Dragon Promoter Finder: recognition of vertebrate RNA polymerase II promoters

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

The Eukaryotic Promoter Database, EPD: new entry types and links to gene expression data

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Integrating genomic homology into gene structure prediction.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Comparing the success of different prediction software in sequence analysis: a review

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Ab initio gene finding in Drosophila genomic DNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Genome annotation assessment in Drosophila melanogaster

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Highly specific localization of promoter regions in large genomic sequences by PromoterInspector: a novel context analysis approach

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Computer software for eukaryotic promoter analysis

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

The biology of eukaryotic promoter prediction--a review

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Eukaryotic promoter recognition

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Prediction of complete gene structures in human genomic DNA

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

High-efficiency full-length cDNA cloning by biotinylated CAP trapper

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Using multiple alignments to improve gene prediction.

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Promoter prediction analysis on the whole human genome.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Evidence for nucleosome depletion at active regulatory regions genome-wide

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Integrated graphical analysis of protein sequence features predicted from sequence composition.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Promoter prediction in the human genome

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Large-scale human promoter mapping using CpG islands.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Stochastic segment models of eukaryotic promoter regions.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Promoter2.0: for the recognition of PolII promoter sequences.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

EST_GENOME: a program to align spliced DNA sequences to unspliced genomic DNA.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1810552

Computational identification of promoters and first exons in the human genome

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16925837

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16925837

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Computer model for recognition of functional transcription start sites in RNA polymerase II promoters of vertebrates

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16925837

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/GB-2006-7-S1-S3

1 reference

Dimensions Publication ID

9 August 2017

0 references

1 reference

9 August 2017

1 reference