(Q35671444)

English

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health

scientific article published on 22 June 2015

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scholarly article

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Europe PubMed Central

PubMed publication ID

9 August 2017

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health (English)

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

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Klebsiella pneumoniae

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population structure

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based on heuristic

inferred from title

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based on heuristic

inferred from title

Thomas R. Connor

8

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Europe PubMed Central

PubMed publication ID

9 August 2017

Kuntaman Kuntaman

object named as

Kuntaman Kuntaman

24

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Mark B. Schultz

object named as

Mark B Schultz

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object named as

Ruth N Zadoks

3

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David Dance

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object named as

Li Yang Hsu

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Richard A. Strugnell

object named as

Richard A Strugnell

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Nicholas Thomson

object named as

Nicholas R Thomson

28

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Claire L. Gorrie

object named as

Claire Gorrie

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Nguyen Thi Khanh Nhu

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Nguyen Thi Khanh Nhu

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Kathryn E Holt

1

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11

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Sylvain Brisse

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Europe PubMed Central

PubMed publication ID

9 August 2017

Constance Schultsz

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Constance Schultsz

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Europe PubMed Central

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9 August 2017

Heiman Frank Louis Wertheim

2

object named as

Heiman Wertheim

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Europe PubMed Central

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9 August 2017

4

object named as

Stephen Baker

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Europe PubMed Central

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9 August 2017

26

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Catrin E Moore

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9 August 2017

25

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Paul N Newton

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9 August 2017

author name string

Chris A Whitehouse

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Europe PubMed Central

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9 August 2017

Adam Jenney

7

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9 August 2017

Juliëtte Severin

10

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Europe PubMed Central

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9 August 2017

Hanwei Cao

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9 August 2017

Jonathan Wilksch

13

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Europe PubMed Central

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9 August 2017

David J Edwards

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9 August 2017

Kinh Van Nguyen

17

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9 August 2017

Trung Vu Nguyen

18

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9 August 2017

Trinh Tuyet Dao

19

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Europe PubMed Central

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9 August 2017

Martijn Mensink

20

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9 August 2017

Vien Le Minh

21

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9 August 2017

language of work or name

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publication date

22 June 2015

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9 August 2017

Proceedings of the National Academy of Sciences of the United States of America

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Europe PubMed Central

PubMed publication ID

9 August 2017

112

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Europe PubMed Central

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9 August 2017

27

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9 August 2017

E3574-81

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Europe PubMed Central

PubMed publication ID

9 August 2017

Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae at a single institution: insights into endemicity from whole-genome sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Klebsiella variicola is a frequent cause of bloodstream infection in the stockholm area, and associated with higher mortality compared to K. pneumoniae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Genomic epidemiology of Klebsiella pneumoniae in Italy and novel insights into the origin and global evolution of its resistance to carbapenem antibiotics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Genomic definition of hypervirulent and multidrug-resistant Klebsiella pneumoniae clonal groups.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Carbapenemase-producing Klebsiella pneumoniae: molecular and genetic decoding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Genome sequencing of an extended series of NDM-producing Klebsiella pneumoniae isolates from neonatal infections in a Nepali hospital characterizes the extent of community- versus hospital-associated transmission in an endemic setting

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Klebsiella: a long way to go towards understanding this enigmatic jet-setter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Whole-genome sequencing to control antimicrobial resistance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

First isolate of KPC-2-producing Klebsiella pneumonaie sequence type 23 from the Americas.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Clinical and molecular characteristics of emerging hypervirulent Klebsiella pneumoniae bloodstream infections in mainland China

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Epidemic Klebsiella pneumoniae ST258 is a hybrid strain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstrat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Population structure of KPC-producing Klebsiella pneumoniae isolates from midwestern U.S. hospitals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus sequence typing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

ARG-ANNOT, a new bioinformatic tool to discover antibiotic resistance genes in bacterial genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

wzi Gene sequencing, a rapid method for determination of capsular type for Klebsiella strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Population genomics of post-vaccine changes in pneumococcal epidemiology.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Hypervirulent (hypermucoviscous) Klebsiella pneumoniae: a new and dangerous breed

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Interaction of lipocalin 2, transferrin, and siderophores determines the replicative niche of Klebsiella pneumoniae during pneumonia.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Epidemiology, aetiology and management of childhood acute community-acquired pneumonia in developing countries--a review.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

The "other" gram-negative bacteria in mastitis: Klebsiella, serratia, and more

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Inference of population structure using dense haplotype data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

The emerging NDM carbapenemases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Molecular typing and virulence analysis of serotype K1 Klebsiella pneumoniae strains isolated from liver abscess patients and stool samples from noninfectious subjects in Hong Kong, Singapore, and Taiwan

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Changes in serogroup and genotype prevalence among carried meningococci in the United Kingdom during vaccine implementation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Comparative genomics and the role of lateral gene transfer in the evolution of bovine adapted Streptococcus agalactiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Phylogenetic groups among Klebsiella pneumoniae isolates from Brazil: relationship with antimicrobial resistance and origin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Microbial etiologies of hospital-acquired bacterial pneumonia and ventilator-associated bacterial pneumonia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

RmpA regulation of capsular polysaccharide biosynthesis in Klebsiella pneumoniae CG43.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Symbiotic nitrogen fixation in the fungus gardens of leaf-cutter ants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Shifting the genomic gold standard for the prokaryotic species definition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Genetic structure and distribution of the colibactin genomic island among members of the family Enterobacteriaceae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Genome sequencing and comparative analysis of Klebsiella pneumoniae NTUH-K2044, a strain causing liver abscess and meningitis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

The real threat of Klebsiella pneumoniae carbapenemase-producing bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Virulent clones of Klebsiella pneumoniae: identification and evolutionary scenario based on genomic and phenotypic characterization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

RAMI: a tool for identification and characterization of phylogenetic clusters in microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Complete genome sequence of the N2-fixing broad host range endophyte Klebsiella pneumoniae 342 and virulence predictions verified in mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Variants of the Klebsiella pneumoniae OKP chromosomal beta-lactamase are divided into two main groups, OKP-A and OKP-B.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Isolation of a chromosomal region of Klebsiella pneumoniae associated with allantoin metabolism and liver infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Klebsiella variicola, a novel species with clinical and plant-associated isolates.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

RmpA2, an activator of capsule biosynthesis in Klebsiella pneumoniae CG43, regulates K2 cps gene expression at the transcriptional level

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Structure, organization and characterization of the gene cluster involved in the production of microcin E492, a channel-forming bacteriocin.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

SHV-1 beta-lactamase is mainly a chromosomally encoded species-specific enzyme in Klebsiella pneumoniae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Klebsiella spp. as nosocomial pathogens: epidemiology, taxonomy, typing methods, and pathogenicity factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

The epidemiology of nosocomial infections caused by Klebsiella pneumoniae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Habitat association of Klebsiella species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Klebsiella pneumoniae and other Enterobacteriaceae producing novel plasmid-mediated beta-lactamases markedly active against third-generation cephalosporins: epidemiologic studies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Correlation of the virulence of Klebsiella pneumoniae K1 and K2 with the presence of a plasmid encoding aerobactin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

12 July 2018

Single origin of three plasmids bearing blaCTX-M-15 from different Klebsiella pneumoniae clones

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

25 September 2018

Pleuritis and suppurative pneumonia associated with a hypermucoviscosity phenotype of Klebsiella pneumoniae in California sea lions (Zalophus californianus).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

25 September 2018

Comparison of prevalence of virulence factors for Klebsiella pneumoniae liver abscesses between isolates with capsular K1/K2 and non-K1/K2 serotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

25 September 2018

Multisystemic abscesses in African green monkeys (Chlorocebus aethiops) with invasive Klebsiella pneumoniae--identification of the hypermucoviscosity phenotype.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

25 September 2018

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1 reference

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25 September 2018

Genetically similar isolates of Klebsiella pneumoniae serotype K1 causing liver abscesses in three continents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

25 September 2018

Development of a rapid identification method for Klebsiella pneumoniae phylogenetic groups and analysis of 420 clinical isolates

1 reference

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25 September 2018

Sequencing and analysis of the large virulence plasmid pLVPK of Klebsiella pneumoniae CG43.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

25 September 2018

Pathogenic potential of environmental Klebsiella pneumoniae isolates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

25 September 2018

Phylogenetic diversity of Klebsiella pneumoniae and Klebsiella oxytoca clinical isolates revealed by randomly amplified polymorphic DNA, gyrA and parC genes sequencing and automated ribotyping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4500264

25 September 2018

Tracking a hospital outbreak of carbapenem-resistant Klebsiella pneumoniae with whole-genome sequencing

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1501049112

21 January 2018

Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1501049112

21 January 2018

The Yersinia high-pathogenicity island: an iron-uptake island

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1501049112

21 January 2018

Diverging roles of bacterial siderophores during infection.

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1501049112

21 January 2018

Single-molecule sequencing to track plasmid diversity of hospital-associated carbapenemase-producing Enterobacteriaceae

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https://api.crossref.org/works/10.1073%2FPNAS.1501049112

21 January 2018

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.1501049112

21 January 2018

Identification and characterization of KvgAS, a two-component system in Klebsiella pneumoniae CG43

1 reference

https://pubmed.ncbi.nlm.nih.gov/26100894

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Capsular serotypes and multilocus sequence types of bacteremic Klebsiella pneumoniae isolates associated with different types of infections

1 reference

https://pubmed.ncbi.nlm.nih.gov/26100894

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic heterogeneity in Klebsiella pneumoniae strains is associated with primary pyogenic liver abscess and metastatic infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/26100894

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1073/PNAS.1501049112

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

2015PNAS..112E3574H

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

9 August 2017

ResearchGate publication ID

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