(Q35678613)

9 August 2017

Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma (English)

1 reference

9 August 2017

0 references

1 reference

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

Eduardo Castro-Nallar

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

Matthew L Bendall

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

Robert J. Freishtat

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

Keith A. Crandall

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

author name string

Marcos Pérez-Losada

1

1 reference

PubMed ID

26125632

9 August 2017

language of work or name

English

0 references

publication date

30 June 2015

1 reference

9 August 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

volume

10

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

issue

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

page(s)

e0131819

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

14 June 2020

copyright license

start time

30 June 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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27 July 2018

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Associations between host gene expression, the mucosal microbiome, and clinical outcome in the pelvic pouch of patients with inflammatory bowel disease

27 July 2018

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The infant nasopharyngeal microbiome impacts severity of lower respiratory infection and risk of asthma development

27 July 2018

1 reference

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The paradigm of cytokine networks in allergic airway inflammation

27 July 2018

1 reference

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Fast and sensitive protein alignment using DIAMOND

27 July 2018

1 reference

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Early respiratory microbiota composition determines bacterial succession patterns and respiratory health in children

27 July 2018

1 reference

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PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples

27 July 2018

1 reference

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The microbiome and the lung

27 July 2018

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STAMP: statistical analysis of taxonomic and functional profiles.

27 July 2018

1 reference

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Analysis of growth factors in serum and induced sputum from patients with asthma

27 July 2018

1 reference

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Pediatric Crohn disease patients exhibit specific ileal transcriptome and microbiome signature

27 July 2018

1 reference

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Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata.

27 July 2018

1 reference

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Cytokines (interleukin-9, IL-17, IL-22, IL-25 and IL-33) and asthma

27 July 2018

1 reference

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Relating the metatranscriptome and metagenome of the human gut.

27 July 2018

1 reference

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Microbiota diversity and gene expression dynamics in human oral biofilms

27 July 2018

1 reference

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Metatranscriptomics of the human oral microbiome during health and disease

27 July 2018

1 reference

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The microbiome and asthma

27 July 2018

1 reference

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Characterization of the molecular interplay between Moraxella catarrhalis and human respiratory tract epithelial cells

27 July 2018

1 reference

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Pathoscope: species identification and strain attribution with unassembled sequencing data

27 July 2018

1 reference

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The role of the bacterial microbiome in lung disease

27 July 2018

1 reference

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The role of the lung microbiome in health and disease. A National Heart, Lung, and Blood Institute workshop report.

27 July 2018

1 reference

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Microbes and mucosal immune responses in asthma.

27 July 2018

1 reference

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Differential analysis of gene regulation at transcript resolution with RNA-seq

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Upper airways microbiota in antibiotic-naïve wheezing and healthy infants from the tropics of rural Ecuador

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Cytokines and cytokine-specific therapy in asthma

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Structure, function and diversity of the healthy human microbiome

27 July 2018

1 reference

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Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples

27 July 2018

1 reference

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The microbiome of the lung

27 July 2018

1 reference

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A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response.

27 July 2018

1 reference

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Dynamic role of epithelium-derived cytokines in asthma

27 July 2018

1 reference

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Fast gapped-read alignment with Bowtie 2

27 July 2018

1 reference

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Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease

27 July 2018

1 reference

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Microbes and asthma: the missing cellular and molecular links

27 July 2018

1 reference

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eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

27 July 2018

1 reference

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The emerging relationship between the airway microbiota and chronic respiratory disease: clinical implications

27 July 2018

1 reference

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Integrative analysis of environmental sequences using MEGAN4

27 July 2018

1 reference

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Topographical continuity of bacterial populations in the healthy human respiratory tract

27 July 2018

1 reference

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27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Novel cytokines and cytokine-producing T cells in allergic disorders

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

The role of cytokines in atopic asthma

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Improving RNA-Seq expression estimates by correcting for fragment bias

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Metatranscriptomic approach to analyze the functional human gut microbiota

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Analysis of the lung microbiome in the "healthy" smoker and in COPD

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Quality control and preprocessing of metagenomic datasets

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Overcoming heterogeneity in pediatric asthma: tobacco smoke and asthma characteristics within phenotypic clusters in an African American cohort

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

The human oral microbiome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

A human gut microbial gene catalogue established by metagenomic sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Disordered microbial communities in asthmatic airways

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Physiologic cold shock increases adherence of Moraxella catarrhalis to and secretion of interleukin 8 in human upper respiratory tract epithelial cells

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Statistical methods for detecting differentially abundant features in clinical metagenomic samples

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Immunologic and inflammatory mechanisms that drive asthma progression to remodeling

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Cytokines and growth factors in airway remodeling in asthma.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

The role of immunoglobulin E in allergy and asthma

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

New insights into the role of cytokines in asthma

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

KEGG: kyoto encyclopedia of genes and genomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Expression of growth factors and remodelling of the airway wall in bronchial asthma

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

27 July 2018

Growth factors in asthma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

IgA antibody-producing cells in peripheral blood after antigen ingestion: evidence for a common mucosal immune system in humans

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

No direct association between asthma and the microbiome based on currently available techniques

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Association of bacteria and viruses with wheezy episodes in young children: prospective birth cohort study

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

25 September 2018

Immunobiology of asthma

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4488395

Strong control, conservative point estimation and simultaneous conservative consistency of false discovery rates: a unified approach

25 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0131819

The role of leukotrienes in airway remodeling

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0131819

Functional and biological characteristics of asthma in cleaning workers

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0131819

Variable p-CREB expression depicts different asthma phenotypes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26125632

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PONE.0131819

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json

14 June 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26125632%20AND%20SRC:MED&resulttype=core&format=json