(Q35708189)

English

Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae

scientific article published on 23 July 2015

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scholarly article

1 reference

Europe PubMed Central

9 August 2017

Comparison of the Mitochondrial Genomes and Steady State Transcriptomes of Two Strains of the Trypanosomatid Parasite, Leishmania tarentolae (English)

1 reference

Europe PubMed Central

9 August 2017

Matteo Pellegrini

4

object named as

Matteo Pellegrini

1 reference

Europe PubMed Central

9 August 2017

object named as

Feng Li

5

0 references

author name string

Larry Simpson

1

1 reference

Europe PubMed Central

9 August 2017

Stephen M Douglass

2

1 reference

Europe PubMed Central

9 August 2017

James A Lake

3

1 reference

Europe PubMed Central

9 August 2017

language of work or name

0 references

publication date

23 July 2015

1 reference

Europe PubMed Central

9 August 2017

PLoS Neglected Tropical Diseases

1 reference

Europe PubMed Central

9 August 2017

9

1 reference

Europe PubMed Central

9 August 2017

7

1 reference

Europe PubMed Central

9 August 2017

e0003841

1 reference

Europe PubMed Central

9 August 2017

copyright license

Creative Commons Attribution 4.0 International

23 July 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Transcriptome sequencing of rhizome tissue of Sinopodophyllum hexandrum at two temperatures

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

RNA binding and core complexes constitute the U-insertion/deletion editosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Mitochondrial RNA editing in trypanosomes: small RNAs in control

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

The insect-phase gRNA transcriptome in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

The structure of the C-terminal domain of the largest editosome interaction protein and its role in promoting RNA binding by RNA-editing ligase L2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Fast gapped-read alignment with Bowtie 2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Crystal structure of a heterodimer of editosome interaction proteins in complex with two copies of a cross-reacting nanobody

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Uridine insertion/deletion editing in trypanosomes: a playground for RNA-guided information transfer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Pentatricopeptide repeat proteins stimulate mRNA adenylation/uridylation to activate mitochondrial translation in trypanosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Trypanosome REH1 is an RNA helicase involved with the 3'-5' polarity of multiple gRNA-guided uridine insertion/deletion RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Structures of a key interaction protein from the Trypanosoma brucei editosome in complex with single domain antibodies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Complete set of mitochondrial pan-edited mRNAs in Leishmania mexicana amazonensis LV78.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Structure of the Mitochondrial Editosome-Like Complex Associated TUTase 1 Reveals Divergent Mechanisms of UTP Selection and Domain Organization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

RET1-catalyzed uridylylation shapes the mitochondrial transcriptome in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

REH2 RNA helicase in kinetoplastid mitochondria: ribonucleoprotein complexes and essential motifs for unwinding and guide RNA (gRNA) binding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Structure of the core editing complex (L-complex) involved in uridine insertion/deletion RNA editing in trypanosomatid mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Guide RNA-binding complex from mitochondria of trypanosomatids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

3' adenylation determines mRNA abundance and monitors completion of RNA editing in T. brucei mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Terminal RNA uridylyltransferases of trypanosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

p166, a link between the trypanosome mitochondrial DNA and flagellum, mediates genome segregation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Dual role of the RNA substrate in selectivity and catalysis by terminal uridylyl transferases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

UTP-bound and Apo Structures of a Minimal RNA Uridylyltransferase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Alternative editing of cytochrome c oxidase III mRNA in trypanosome mitochondria generates protein diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Bent helical structure in kinetoplast DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

High resolution crystal structure of a key editosome enzyme from Trypanosoma brucei: RNA editing ligase 1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

The structure and replication of kinetoplast DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Closing the gaps in kinetoplast DNA network replication.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Mitochondrial proteins and complexes in Leishmania and Trypanosoma involved in U-insertion/deletion RNA editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

A high-order trans-membrane structural linkage is responsible for mitochondrial genome positioning and segregation by flagellar basal bodies in trypanosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

A 100-kD complex of two RNA-binding proteins from mitochondria of Leishmania tarentolae catalyzes RNA annealing and interacts with several RNA editing components

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Bravais-Pearson and Spearman correlation coefficients: meaning, test of hypothesis and confidence interval.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Guide RNAs of the recently isolated LEM125 strain of Leishmania tarentolae: an unexpected complexity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Evolution of RNA editing in trypanosome mitochondria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

A structural analysis of the bent kinetoplast DNA from Crithidia fasciculata by high resolution chemical probing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Localization of the intrinsically bent DNA region upstream of the E.coli rrnB P1 promoter

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Disruption of RNA editing in Leishmania tarentolae by the loss of minicircle-encoded guide RNA genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Sense from nonsense: RNA editing in mitochondria of kinetoplastid protozoa and slime molds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Multiple guide RNAs for identical editing of Trypanosoma brucei apocytochrome b mRNA have an unusual minicircle location and are developmentally regulated.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

A single-stranded DNA binding protein binds the origin of replication of the duplex kinetoplast DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Strains and clones of Trypanosoma cruzi can be characterized by pattern of restriction endonuclease products of kinetoplast DNA minicircles

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Isolation of the Kinetoplast DNA ofLeishmania tarentolaein the Form of a Network*

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Isolation and characterization of kinetoplast DNA networks and minicircles from Crithidia fasciculata.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

DNA bending at adenine . thymine tracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Bent DNA structures associated with several origins of replication are recognized by a unique enzyme from trypanosomatids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Comparison of several lizard Leishmania species and strains in terms of kinetoplast minicircle and maxicircle DNA sequences, nuclear chromosomes, and membrane lipids.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

kDNA minicircles of the major sequence class of C. fasciculata contain a single region of bent helix widely separated from the two origins of replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

A highly bent fragment of Crithidia fasciculata kinetoplast DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Sequence-directed bent DNA helix is the specific binding site for Crithidia fasciculata nicking enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Conserved sequence blocks in kinetoplast minicircles from diverse species of trypanosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

RNA editing and the mitochondrial cryptogenes of kinetoplastid protozoa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Timing of nuclear and kinetoplast DNA replication and early morphological events in the cell cycle of Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Intrinsically bent DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Extensive editing of both processed and preprocessed maxicircle CR6 transcripts in Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

A model for RNA editing in kinetoplastid mitochondria: "guide" RNA molecules transcribed from maxicircle DNA provide the edited information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Intrinsically bent DNA flanks both sides of an RNA polymerase I transcription start site. Both regions display novel electrophoretic mobility

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Generation of unexpected editing patterns in Leishmania tarentolae mitochondrial mRNAs: misediting produced by misguiding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

The polarity of editing within a multiple gRNA-mediated domain is due to formation of anchors for upstream gRNAs by downstream editing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Isolation of maxicircle component of kinetoplast DNA from hemoflagellate protozoa

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

12 July 2018

Guide to the nomenclature of kinetoplastid RNA editing: a proposal

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

25 September 2018

Kinetoplastid guide RNA biogenesis is dependent on subunits of the mitochondrial RNA binding complex 1 and mitochondrial RNA polymerase.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

25 September 2018

Snapshots of the RNA editing machine in trypanosomes captured at different assembly stages in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

25 September 2018

Structural basis for UTP specificity of RNA editing TUTases from Trypanosoma brucei

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

25 September 2018

Sequence heterogeneity and anomalous electrophoretic mobility of kinetoplast minicircle DNA from Leishmania tarentolae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

25 September 2018

Isolation of kinetoplast-mitochondrial complexes from Leishmania tarentolae.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4512693

25 September 2018

The identity of Leishmania tarentolae Wenyon 1921

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A bent helix in kinetoplast DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Visualization of the bent helix in kinetoplast DNA by electron microscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Physical characterization of a kinetoplast DNA fragment with unusual properties

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mitochondrial mRNA 3' cleavage/polyadenylation and RNA editing in Trypanosoma brucei are independent events

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Presence of a bent helix in fragments of kinetoplast DNA minicircles from several trypanosomatid species

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MAFFT: iterative refinement and additional methods

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unlocking the secrets of trypanosome kinetoplast DNA network replication

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bending and flexibility of kinetoplast DNA

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bent DNA in the human adenovirus type 2 E1A enhancer is an architectural element for transcription stimulation

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synchronization of Leishmania tarentolae by hydroxyurea

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A theoretical study of random segregation of minicircles in trypanosomatids

1 reference

https://pubmed.ncbi.nlm.nih.gov/26204118

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1371/JOURNAL.PNTD.0003841

1 reference

Europe PubMed Central

9 August 2017

1 reference

Europe PubMed Central

9 August 2017

1 reference

Europe PubMed Central

9 August 2017

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