(Q35751319)

10 August 2017

title

A DNA-based nanomechanical device used to characterize the distortion of DNA by Apo-SoxR protein (English)

1 reference

10 August 2017

4

Nadrian C Seeman

1 reference

10 August 2017

Chunhua Liu

1

1 reference

10 August 2017

Eunsuk Kim

series ordinal

2

1 reference

10 August 2017

Bruce Demple

series ordinal

3

1 reference

10 August 2017

language of work or name

English

0 references

publication date

26 January 2012

1 reference

10 August 2017

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10 August 2017

volume

51

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10 August 2017

issue

5

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10 August 2017

page(s)

937-943

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Sequence dependence of DNA bending rigidity

10 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

DNA scissors device used to measure MutS binding to DNA mis-pairs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

A DNA-based nanomechanical device with three robust states

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Crystal structure of the [2Fe-2S] oxidative-stress sensor SoxR bound to DNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Engineered holliday junctions as single-molecule reporters for protein-DNA interactions with application to a MerR-family regulator

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Architecture with GIDEON, a program for design in structural DNA nanotechnology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

From genes to machines: DNA nanomechanical devices

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

The thermodynamics of DNA structural motifs

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

The MerR family of transcriptional regulators.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

A robust DNA mechanical device controlled by hybridization topology

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

A DNA-fuelled molecular machine made of DNA

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

A nanomechanical device based on the B-Z transition of DNA.

2 October 2017

1 reference

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A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Spacing of promoter elements regulates the basal expression of the soxS gene and converts SoxR from a transcriptional activator into a repressor

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Induction of manganese-containing superoxide dismutase in anaerobic Escherichia coli by diamide and 1,10-phenanthroline: sites of transcriptional regulation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

The chemistry and biology of left-handed Z-DNA.

2 October 2017

1 reference

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Nucleic acid junctions and lattices

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Fluorescence Energy Transfer as a Spectroscopic Ruler

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Allosteric underwinding of DNA is a critical step in positive control of transcription by Hg-MerR

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Predicting stability of DNA duplexes in solutions containing magnesium and monovalent cations

12 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

A protein-driven DNA device that measures the excess binding energy of proteins that distort DNA.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Oligonucleotide melting temperatures under PCR conditions: nearest-neighbor corrections for Mg(2+), deoxynucleotide triphosphate, and dimethyl sulfoxide concentrations with comparison to alternative empirical formulas

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Activation of SoxR-dependent transcription in vitro by noncatalytic or NifS-mediated assembly of [2Fe-2S] clusters into apo-SoxR.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277648

Torsional control of double-stranded DNA branch migration

25 September 2018

1 reference

12 December 2020

Escherichia coli SoxR protein: sensor/transducer of oxidative stress and nitric oxide

1 reference

12 December 2020

Gene synthesis machines: DNA chemistry and its uses

1 reference

12 December 2020

De novo design of sequences for nucleic acid structural engineering

1 reference

12 December 2020

Determination of DNA helical handedness by fluorescence resonance energy transfer

1 reference

12 December 2020

Identifiers

DOI

10.1021/BI201196S

1 reference

10 August 2017

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10 August 2017

1 reference