(Q35751671)

10 August 2017

title

Direct maximization of protein identifications from tandem mass spectra (English)

1 reference

10 August 2017

2

Jason Weston

1 reference

10 August 2017

5

William Stafford Noble

1 reference

10 August 2017

4

Michael J MacCoss

1 reference

10 August 2017

Marina Spivak

1

1 reference

10 August 2017

Daniela Tomazela

series ordinal

3

1 reference

10 August 2017

language of work or name

1 reference

3 November 2011

1 reference

Molecular & Cellular Proteomics

10 August 2017

published in

1 reference

10 August 2017

volume

11

1 reference

10 August 2017

issue

2

1 reference

10 August 2017

page(s)

M111.012161

1 reference

Machines that learn to segment images: a crucial technology for connectomics

10 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

False discovery rates of protein identifications: a strike against the two-peptide rule

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

IDPicker 2.0: Improved protein assembly with high discrimination peptide identification filtering

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Improvements to the percolator algorithm for Peptide identification from shotgun proteomics data sets

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Statistical validation of peptide identifications in large-scale proteomics using the target-decoy database search strategy and flexible mixture modeling

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

False discovery rates and related statistical concepts in mass spectrometry-based proteomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Modes of inference for evaluating the confidence of peptide identifications

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Advancement in protein inference from shotgun proteomics using peptide detectability

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Proteomic parsimony through bipartite graph analysis improves accuracy and transparency

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Data management and preliminary data analysis in the pilot phase of the HUPO Plasma Proteome Project

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Open mass spectrometry search algorithm

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

A statistical model for identifying proteins by tandem mass spectrometry

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Global analysis of protein expression in yeast

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Probability-based protein identification by searching sequence databases using mass spectrometry data

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Dissecting the regulatory circuitry of a eukaryotic genome

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Rapid and accurate peptide identification from tandem mass spectra

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Semisupervised model-based validation of peptide identifications in mass spectrometry-based proteomics.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Prediction of error associated with false-positive rate determination for peptide identification in large-scale proteomics experiments using a combined reverse and forward peptide sequence database strategy

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Intensity-based protein identification by machine learning from a library of tandem mass spectra.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

A New Algorithm for the Evaluation of Shotgun Peptide Sequencing in Proteomics: Support Vector Machine Classification of Peptide MS/MS Spectra and SEQUEST Scores

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Qscore: an algorithm for evaluating SEQUEST database search results

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3277760

Gradient-based learning applied to document recognition

25 September 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.012161

A unified architecture for natural language processing: deep neural networks with multitask learning

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.012161

21 January 2018

Support-vector networks

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.012161

A direct approach to false discovery rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M111.012161

21 January 2018

Identifiers

DOI

10.1074/MCP.M111.012161

1 reference

10 August 2017

1 reference

10 August 2017

1 reference