(Q35777738)

English

In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project's reference genome database

scientific article published on 16 September 2015

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scholarly article

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

In silico identification of bacteriocin gene clusters in the gastrointestinal tract, based on the Human Microbiome Project's reference genome database (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

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inferred from title

1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Caitriona M Guinane

2

1 reference

Europe PubMed Central

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24 February 2020

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

Reynolds Paul Ross

4

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

5

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Europe PubMed Central

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24 February 2020

6

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Europe PubMed Central

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24 February 2020

author name string

Caitriona M Guinane

2

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

Colin Hill

3

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

R Paul Ross

4

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

Paul W O'Toole

5

1 reference

Europe PubMed Central

PubMed publication ID

10 August 2017

Paul D Cotter

6

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Europe PubMed Central

PubMed publication ID

10 August 2017

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16 September 2015

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24 February 2020

BMC Microbiology

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

15

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

183

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

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1 reference

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A systematic analysis of biosynthetic gene clusters in the human microbiome reveals a common family of antibiotics.

1 reference

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Microencapsulated Bifidobacterium longum subsp. infantis ATCC 15697 favorably modulates gut microbiota and reduces circulating endotoxins in F344 rats

1 reference

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Novel LanT associated lantibiotic clusters identified by genome database mining

1 reference

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1 reference

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A gut microbiota-targeted dietary intervention for amelioration of chronic inflammation underlying metabolic syndrome

1 reference

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27 July 2018

The long-term stability of the human gut microbiota

1 reference

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BAGEL3: Automated identification of genes encoding bacteriocins and (non-)bactericidal posttranslationally modified peptides.

1 reference

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27 July 2018

Bacteriocin production by Bifidobacterium spp. A review

1 reference

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27 July 2018

Isolation and characterization of bacteriocin-producing bacteria from the intestinal microbiota of elderly Irish subjects.

1 reference

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27 July 2018

Ribosomally synthesized and post-translationally modified peptide natural products: overview and recommendations for a universal nomenclature

1 reference

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27 July 2018

A metagenome-wide association study of gut microbiota in type 2 diabetes

1 reference

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27 July 2018

Bacteroides uniformis CECT 7771 ameliorates metabolic and immunological dysfunction in mice with high-fat-diet induced obesity

1 reference

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Lantibiotics from Geobacillus thermodenitrificans.

1 reference

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27 July 2018

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon.

1 reference

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27 July 2018

Linking long-term dietary patterns with gut microbial enterotypes

1 reference

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27 July 2018

Genome mining for radical SAM protein determinants reveals multiple sactibiotic-like gene clusters.

1 reference

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27 July 2018

Biological systems discovery in silico: radical S-adenosylmethionine protein families and their target peptides for posttranslational modification

1 reference

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27 July 2018

Bifidobacteria can protect from enteropathogenic infection through production of acetate

1 reference

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Entianin, a novel subtilin-like lantibiotic from Bacillus subtilis subsp. spizizenii DSM 15029T with high antimicrobial activity

1 reference

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The discovery of salinosporamide K from the marine bacterium "Salinispora pacifica" by genome mining gives insight into pathway evolution

1 reference

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27 July 2018

In silico analysis highlights the frequency and diversity of type 1 lantibiotic gene clusters in genome sequenced bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Genome mining for ribosomally synthesized natural products

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Intestinal Bacteroides species associated with coeliac disease

1 reference

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27 July 2018

Plantazolicin, a novel microcin B17/streptolysin S-like natural product from Bacillus amyloliquefaciens FZB42.

1 reference

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27 July 2018

Differential adaptation of human gut microbiota to bariatric surgery-induced weight loss: links with metabolic and low-grade inflammation markers

1 reference

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27 July 2018

Thuricin CD, a posttranslationally modified bacteriocin with a narrow spectrum of activity against Clostridium difficile.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Discovery of unique lanthionine synthetases reveals new mechanistic and evolutionary insights

1 reference

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27 July 2018

Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

A human gut microbial gene catalogue established by metagenomic sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Identification of a novel two-peptide lantibiotic, lichenicidin, following rational genome mining for LanM proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

A microbial symbiosis factor prevents intestinal inflammatory disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Bacteroides: the good, the bad, and the nitty-gritty

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Bacteriocin production as a mechanism for the antiinfective activity of Lactobacillus salivarius UCC118.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Bacteroides dorei sp. nov., isolated from human faeces.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Posttranslational conversion of L-serines to D-alanines is vital for optimal production and activity of the lantibiotic lacticin 3147

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Bacteriocins: developing innate immunity for food

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

ACT: the Artemis Comparison Tool

1 reference

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27 July 2018

Albusin B, a bacteriocin from the ruminal bacterium Ruminococcus albus 7 that inhibits growth of Ruminococcus flavefaciens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Artemis: sequence visualization and annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

A family of bacteriocin ABC transporters carry out proteolytic processing of their substrates concomitant with export

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4573289

27 July 2018

Bacteriocins of lactic acid bacteria

1 reference

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27 July 2018

Bacteriocin production by strains of Bacteroides isolated from human feces and the role of these strains in the bacterial ecology of the colon

1 reference

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Characterization and mode of action of a bacteriocin produced by a Bacteroides fragilis strain

1 reference

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27 July 2018

Diversity and dynamics of bacteriocins from human microbiome

1 reference

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25 September 2018

Members of the human gut microbiota involved in recovery from Vibrio cholerae infection

1 reference

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25 September 2018

Human fecal source identification with real-time quantitative PCR.

1 reference

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1 reference

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Assessing the human gut microbiota in metabolic diseases

1 reference

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1 reference

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1 reference

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Bacteriocins - a viable alternative to antibiotics?

1 reference

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25 September 2018

The role of the gut microbiota in nutrition and health.

1 reference

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25 September 2018

The impact of the gut microbiota on human health: an integrative view

1 reference

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25 September 2018

Effect of Lactobacillus salivarius bacteriocin Abp118 on the mouse and pig intestinal microbiota

1 reference

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25 September 2018

Divergent metabolic outcomes arising from targeted manipulation of the gut microbiota in diet-induced obesity.

1 reference

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25 September 2018

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25 September 2018

Dietary modulation of clostridial cluster XIVa gut bacteria (Roseburia spp.) by chitin-glucan fiber improves host metabolic alterations induced by high-fat diet in mice.

1 reference

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Discovery and in vitro biosynthesis of haloduracin, a two-component lantibiotic

1 reference

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25 September 2018

Production of bacteriocin by Bacteriodes fragilis and partial characterization

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25 September 2018

Molecular mechanisms of bacteriocin evolution.

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25 September 2018

Designation of Type Strains for Bifidobacterium Species

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21 January 2018

Characterization of enterocin- and salivaricin-producing lactic acid bacteria from the mammalian gastrointestinal tract

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a novel two-peptide lantibiotic, haloduracin, produced by the alkaliphile Bacillus halodurans C-125

1 reference

https://pubmed.ncbi.nlm.nih.gov/26377179

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12866-015-0515-4

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

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release_slghn5tf7nfyjbbczdqh4x72o4

1 reference

https://api.fatcat.wiki/v0/release/slghn5tf7nfyjbbczdqh4x72o4

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26377179%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

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