(Q35780165)

English

pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patterns

scientific article published on 3 November 2011

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scholarly article

1 reference

Europe PubMed Central

10 August 2017

pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patterns (English)

1 reference

Europe PubMed Central

10 August 2017

Maxwell Burroughs

1

object named as

A Maxwell Burroughs

0 references

object named as

Carsten O Daub

4

0 references

Yoshihide Hayashizaki

5

object named as

Yoshihide Hayashizaki

1 reference

Europe PubMed Central

10 August 2017

object named as

Yoshinari Ando

3

0 references

A Maxwell Burroughs

1

object named as

A Maxwell Burroughs

1 reference

Europe PubMed Central

10 August 2017

Mitsuoki Kawano

2

object named as

Mitsuoki Kawano

1 reference

Europe PubMed Central

10 August 2017

language of work or name

0 references

publication date

3 November 2011

1 reference

Europe PubMed Central

10 August 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

10 August 2017

40

1 reference

Europe PubMed Central

10 August 2017

1424-1437

1 reference

Europe PubMed Central

10 August 2017

4

1 reference

Europe PubMed Central

10 August 2017

copyright license

Creative Commons Attribution-NonCommercial 3.0 Unported

7 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

0 references

Deep sequencing of microRNA precursors reveals extensive 3' end modification

1 reference

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Post-transcriptional generation of miRNA variants by multiple nucleotidyl transferases contributes to miRNA transcriptome complexity

1 reference

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27 July 2018

Dicer recognizes the 5' end of RNA for efficient and accurate processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

1 reference

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1 reference

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Single-molecule approach to immunoprecipitated protein complexes: insights into miRNA uridylation

1 reference

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The role of the precursor structure in the biogenesis of microRNA

1 reference

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CentroidHomfold-LAST: accurate prediction of RNA secondary structure using automatically collected homologous sequences

1 reference

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Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis

1 reference

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Northern blotting analysis of microRNAs, their precursors and RNA interference triggers

1 reference

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Improved annotation of C. elegans microRNAs by deep sequencing reveals structures associated with processing by Drosha and Dicer

1 reference

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Two-step cleavage of hairpin RNA with 5' overhangs by human DICER

1 reference

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1 reference

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SAMStat: monitoring biases in next generation sequencing data

1 reference

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Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training

1 reference

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27 July 2018

miRBase: integrating microRNA annotation and deep-sequencing data

1 reference

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Reduction of non-insert sequence reads by dimer eliminator LNA oligonucleotide for small RNA deep sequencing

1 reference

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27 July 2018

The UCSC Genome Browser database: update 2011

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

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MicroRNA targeting in mammalian genomes: genes and mechanisms

1 reference

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27 July 2018

Structural basis of microRNA length variety.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

The widespread regulation of microRNA biogenesis, function and decay

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Nuclear-localized tiny RNAs are associated with transcription initiation and splice sites in metazoans.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Comparison and calibration of transcriptome data from RNA-Seq and tiling arrays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

A novel miRNA processing pathway independent of Dicer requires Argonaute2 catalytic activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

A dicer-independent miRNA biogenesis pathway that requires Ago catalysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Mammalian microRNAs: experimental evaluation of novel and previously annotated genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Human tRNA-derived small RNAs in the global regulation of RNA silencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

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The transcriptional regulation of miR-21, its multiple transcripts, and their implication in prostate cancer.

1 reference

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27 July 2018

MicroRNA assassins: factors that regulate the disappearance of miRNAs.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

A high-resolution structure of the pre-microRNA nuclear export machinery

1 reference

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27 July 2018

Sorting of Drosophila small silencing RNAs partitions microRNA* strands into the RNA interference pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Model-based quality assessment and base-calling for second-generation sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Comprehensive classification of nucleotidyltransferase fold proteins: identification of novel families and their representatives in human

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs

1 reference

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TagDust--a program to eliminate artifacts from next generation sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Lin28 recruits the TUTase Zcchc11 to inhibit let-7 maturation in mouse embryonic stem cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

LIN-28 and the poly(U) polymerase PUP-2 regulate let-7 microRNA processing in Caenorhabditis elegans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

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Widespread shortening of 3'UTRs by alternative cleavage and polyadenylation activates oncogenes in cancer cells

1 reference

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27 July 2018

First step in pre-miRNAs processing by human Dicer.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

The Sequence Alignment/Map format and SAMtools

1 reference

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Many roads to maturity: microRNA biogenesis pathways and their regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Selective stabilization of mammalian microRNAs by 3' adenylation mediated by the cytoplasmic poly(A) polymerase GLD-2.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Importin 8 is a gene silencing factor that targets argonaute proteins to distinct mRNAs

1 reference

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A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

27 July 2018

Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex

1 reference

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A human snoRNA with microRNA-like functions

1 reference

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27 July 2018

Lin28 mediates the terminal uridylation of let-7 precursor MicroRNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

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Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

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Fluorescence correlation spectroscopy and fluorescence cross-correlation spectroscopy reveal the cytoplasmic origination of loaded nuclear RISC in vivo in human cells

1 reference

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Lin-28 interaction with the Let-7 precursor loop mediates regulated microRNA processing

1 reference

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The Argonaute protein family

1 reference

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Selective blockade of microRNA processing by Lin28

1 reference

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1 reference

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Mammalian mirtron genes

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RNA-specific ribonucleotidyl transferases

1 reference

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1 reference

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1 reference

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Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex

1 reference

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Cleavage of the siRNA passenger strand during RISC assembly in human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

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The Microprocessor complex mediates the genesis of microRNAs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

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Single processing center models for human Dicer and bacterial RNase III

1 reference

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Nuclear export of microRNA precursors

1 reference

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27 July 2018

Mfold web server for nucleic acid folding and hybridization prediction

1 reference

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Human Dicer preferentially cleaves dsRNAs at their termini without a requirement for ATP

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3287202

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1 reference

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27 July 2018

DNA polymerase beta-like nucleotidyltransferase superfamily: identification of three new families, classification and evolutionary history

1 reference

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1 reference

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25 September 2018

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1 reference

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25 September 2018

BEDTools: a flexible suite of utilities for comparing genomic features

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25 September 2018

A novel class of small RNAs: tRNA-derived RNA fragments (tRFs).

1 reference

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25 September 2018

TUT4 in concert with Lin28 suppresses microRNA biogenesis through pre-microRNA uridylation

1 reference

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25 September 2018

Evidence for human microRNA-offset RNAs in small RNA sequencing data

1 reference

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25 September 2018

CENTROIDFOLD: a web server for RNA secondary structure prediction

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25 September 2018

A feedback loop comprising lin-28 and let-7 controls pre-let-7 maturation during neural stem-cell commitment

1 reference

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25 September 2018

Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression.

1 reference

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25 September 2018

Argonaute proteins: key players in RNA silencing

1 reference

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25 September 2018

The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila

1 reference

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25 September 2018

MicroRNAs: genomics, biogenesis, mechanism, and function

1 reference

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25 September 2018

Misregulation of miR-1 processing is associated with heart defects in myotonic dystrophy

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cytoplasmic RNA extraction from fresh and frozen mammalian tissues

1 reference

https://pubmed.ncbi.nlm.nih.gov/22058130

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKR903

1 reference

Europe PubMed Central

10 August 2017

1 reference

Europe PubMed Central

10 August 2017

1 reference

Europe PubMed Central

10 August 2017

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