(Q35788248)

English

From pathways to networks: connecting dots by establishing protein-protein interaction networks in signaling pathways using affinity purification and mass spectrometry.

scientific article published on 18 October 2014

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13 March 2020

From pathways to networks: connecting dots by establishing protein-protein interaction networks in signaling pathways using affinity purification and mass spectrometry (English)

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13 March 2020

protein-protein interaction

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13 March 2020

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Xu Li

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Junjie Chen

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Identification of novel protein-protein interactions using a versatile mammalian tandem affinity purification expression system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

The Drosophila Mst ortholog, hippo, restricts growth and cell proliferation and promotes apoptosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

hippo encodes a Ste-20 family protein kinase that restricts cell proliferation and promotes apoptosis in conjunction with salvador and warts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Differential ubiquitination defines the functional status of the tumor suppressor Smad4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Tandem Mass Tags: A Novel Quantification Strategy for Comparative Analysis of Complex Protein Mixtures by MS/MS

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Mass spectrometry-based proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

MDC1 is coupled to activated CHK2 in mammalian DNA damage response pathways

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

STRING: a database of predicted functional associations between proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

BIND: the Biomolecular Interaction Network Database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

salvador Promotes both cell cycle exit and apoptosis in Drosophila and is mutated in human cancer cell lines

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Comparative assessment of large-scale data sets of protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Functional organization of the yeast proteome by systematic analysis of protein complexes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Mass spectrometry for the study of protein-protein interactions.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Gene ontology: tool for the unification of biology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

DIP: the database of interacting proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

A generic protein purification method for protein complex characterization and proteome exploration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Quantitative analysis of complex protein mixtures using isotope-coded affinity tags

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

Identifying tumor suppressors in genetic mosaics: the Drosophila lats gene encodes a putative protein kinase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

The Drosophila tumor suppressor gene warts encodes a homolog of human myotonic dystrophy kinase and is required for the control of cell shape and proliferation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

A novel genetic system to detect protein-protein interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4482759

27 July 2018

An automated multidimensional protein identification technology for shotgun proteomics

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Increasing throughput in targeted proteomics assays: 54-plex quantitation in a single mass spectrometry run.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Benchmarking stable isotope labeling based quantitative proteomics

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

TOPP--the OpenMS proteomics pipeline

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Virtual expert mass spectrometrist: iTRAQ tool for database-dependent search, quantitation and result storage.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Proteomics of Smad4 regulated transforming growth factor-beta signalling in colon cancer cells.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Proteomic strategies to characterize signaling pathways.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Ubiquitinated proteome: ready for global?

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Wnt proteins are lipid-modified and can act as stem cell growth factors

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

O-linked N-acetylglucosamine is present on the extracellular domain of notch receptors

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Reactome pathway analysis to enrich biological discovery in proteomics data sets

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Methods for the detection and analysis of protein-protein interactions

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

DBC1 is a negative regulator of SIRT1

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Interactome of transforming growth factor-beta type I receptor (TbetaRI): inhibition of TGFbeta signaling by Epac1.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Semi-supervised learning for peptide identification from shotgun proteomics datasets.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Probability-based protein identification by searching sequence databases using mass spectrometry data

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

SAINT: probabilistic scoring of affinity purification-mass spectrometry data

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

The Hippo signaling pathway interactome

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Analysis of protein interactions using fluorescence technologies

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

A green fluorescent protein-based reverse two-hybrid system: application to the characterization of large numbers of potential protein-protein interactions

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

IntAct--open source resource for molecular interaction data

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Shar-pei mediates cell proliferation arrest during imaginal disc growth in Drosophila

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Hippo signaling in organ size control

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

The Hippo-YAP pathway: new connections between regulation of organ size and cancer

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

The Hippo pathway and human cancer.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

"Omic" risk assessment.

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice

1 reference

https://api.crossref.org/works/10.1002%2FPMIC.201400147

21 January 2018

Virtual Expert Mass Spectrometrist v3.0: an integrated tool for proteome analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/25137225

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1002/PMIC.201400147

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25137225%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25137225%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

1 reference

Europe PubMed Central

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:25137225%20AND%20SRC:MED&resulttype=core&format=json

13 March 2020

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