(Q35810098)

10 August 2017

LYRA, a webserver for lymphocyte receptor structural modeling (English)

1 reference

10 August 2017

Michael Schantz Klausen

Michael Schantz Klausen

1

0 references

Mads Valdemar Anderson

Mads Valdemar Anderson

2

0 references

Paolo Marcatili

Paolo Marcatili

5

0 references

Morten Nielsen

Morten Nielsen

4

0 references

author name string

Martin Closter Jespersen

3

1 reference

PMCID

4489227

10 August 2017

language of work or name

English

0 references

publication date

24 May 2015

1 reference

10 August 2017

Nucleic Acids Research

1 reference

10 August 2017

43

1 reference

10 August 2017

W1

1 reference

10 August 2017

W349-55

1 reference

Creative Commons Attribution 4.0 International

10 August 2017

start time

11 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

αβ T cell antigen receptor recognition of CD1a presenting self lipid ligands

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Clinical application of genetically modified T cells in cancer therapy

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Antibody informatics for drug discovery

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Antibody modeling assessment II. Structures and models

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Blind prediction performance of RosettaAntibody 3.0: grafting, relaxation, kinematic loop modeling, and full CDR optimization.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Gene-engineered T cells for cancer therapy

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Antibody modeling assessment

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Mutation pattern of paired immunoglobulin heavy and light variable domains in chronic lymphocytic leukemia B cells

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

The association of heavy and light chain variable domains in antibodies: implications for antigen specificity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

HMMER web server: interactive sequence similarity searching

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

A new clustering of antibody CDR loop conformations

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Stereotyped patterns of B-cell receptor in splenic marginal zone lymphoma

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

IMGT/3Dstructure-DB and IMGT/DomainGapAlign: a database and a tool for immunoglobulins or antibodies, T cell receptors, MHC, IgSF and MhcSF.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Precise determination of the diversity of a combinatorial antibody library gives insight into the human immunoglobulin repertoire

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Improved prediction of protein side-chain conformations with SCWRL4

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

RosettaAntibody: antibody variable region homology modeling server

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

PIGS: automatic prediction of antibody structures

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

IMGT/LIGM-DB, the IMGT comprehensive database of immunoglobulin and T cell receptor nucleotide sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

PISCES: recent improvements to a PDB sequence culling server

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

CD4(+) regulatory T cells in autoimmunity and allergy

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

TCR peptide therapy in human autoimmune diseases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

WAM: an improved algorithm for modelling antibodies on the WEB.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Canonical structures for the hypervariable regions of T cell alphabeta receptors

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Standard conformations for the canonical structures of immunoglobulins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Conformations of immunoglobulin hypervariable regions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Antibody modeling using the prediction of immunoglobulin structure (PIGS) web server [corrected].

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Kotai Antibody Builder: automated high-resolution structural modeling of antibodies.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Second antibody modeling assessment (AMA-II).

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Igs expressed by chronic lymphocytic leukemia B cells show limited binding-site structure variability.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Structural repertoire of immunoglobulin λ light chains

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Analysis and improvements to Kabat and structurally correct numbering of antibody variable domains.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Structural classification of CDR-H3 revisited: a lesson in antibody modeling

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

3DCoffee: combining protein sequences and structures within multiple sequence alignments

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4489227

Systematic classification of CDR-L3 in antibodies: implications of the light chain subtypes and the VL-VH interface

25 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26007650

12 December 2020

inferred from PubMed ID database lookup

Canonical structures for the hypervariable regions of immunoglobulins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26007650

12 December 2020

inferred from PubMed ID database lookup

Structural classification of CDR-H3 in antibodies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26007650

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/NAR/GKV535

1 reference

journals/nar/KlausenAJNM15

10 August 2017

1 reference

DBLP Dataset 2021-01-02

release_immgjruugfhcjes3nidvckfiuu

28 January 2021

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/immgjruugfhcjes3nidvckfiuu

24 November 2022

mapped directly with Wikidata item

PMCID

4489227

1 reference

10 August 2017

1 reference

PMCID

4489227