(Q35812370)

10 August 2017

Expression divergence measured by transcriptome sequencing of four yeast species (English)

1 reference

10 August 2017

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4

Chip Stewart

1 reference

10 August 2017

Michele A Busby

1

1 reference

10 August 2017

Jesse M Gray

2

1 reference

10 August 2017

Allen M Costa

3

1 reference

10 August 2017

Michael P Stromberg

5

1 reference

10 August 2017

Derek Barnett

6

1 reference

10 August 2017

Jeffrey H Chuang

7

1 reference

10 August 2017

Michael Springer

8

1 reference

10 August 2017

Gabor T Marth

9

1 reference

10 August 2017

language of work or name

English

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publication date

29 December 2011

1 reference

10 August 2017

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10 August 2017

12

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10 August 2017

635

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describes a project that uses

10 August 2017

DESeq2

object named as

DESeq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

BamTools: a C++ API and toolkit for analyzing and managing BAM files

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Differential expression analysis for sequence count data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

A comparison of RNA-Seq and high-density exon array for detecting differential gene expression between closely related species

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Statistical design and analysis of RNA sequencing data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Regulatory divergence in Drosophila revealed by mRNA-seq.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Conserved developmental transcriptomes in evolutionarily divergent species.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

A scaling normalization method for differential expression analysis of RNA-seq data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Polygenic and directional regulatory evolution across pathways in Saccharomyces

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Roles of trans and cis variation in yeast intraspecies evolution of gene expression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Genetic interactions between transcription factors cause natural variation in yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

AmiGO: online access to ontology and annotation data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Single-species microarrays and comparative transcriptomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Mapping and quantifying mammalian transcriptomes by RNA-Seq

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

The transcriptional landscape of the yeast genome defined by RNA sequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Differential gene expression in incipient species of Anopheles gambiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Comparative analysis indicates regulatory neofunctionalization of yeast duplicates

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Evolution of primate gene expression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

An improved map of conserved regulatory sites for Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Multi-species microarrays reveal the effect of sequence divergence on gene expression profiles

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Gene expression levels assessed by oligonucleotide microarray analysis and quantitative real-time RT-PCR -- how well do they correlate?

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Toward a neutral evolutionary model of gene expression

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Rapid evolution of expression and regulatory divergences after yeast gene duplication

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Sequencing and comparison of yeast species to identify genes and regulatory elements

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Precision and functional specificity in mRNA decay

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3296765

Evolution of proteins and gene expression levels are coupled in Drosophila and are independently associated with mRNA abundance, protein length, and number of protein-protein interactions.

11 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-635

Evolutionary conservation of expression profiles between human and mouse orthologous genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-635

Identification and distinct regulation of yeast TATA box-containing genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-635

Quantifying variation in gene expression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-635

A yeast hybrid provides insight into the evolution of gene expression regulation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-635

Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22206443

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

A genetic signature of interspecies variations in gene expression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22206443

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-635

1 reference

10 August 2017

1 reference

10 August 2017

1 reference