(Q35826186)

10 August 2017

Counterintuitive DNA Sequence Dependence in Supercoiling-Induced DNA Melting (English)

1 reference

10 August 2017

Rifka Vlijm

1

0 references

Cees Dekker

series ordinal

3

object named as

Cees Dekker

1 reference

10 August 2017

Jaco V D Torre

2

1 reference

PMC publication ID

4625975

10 August 2017

language of work or name

English

0 references

publication date

29 October 2015

1 reference

10 August 2017

1 reference

10 August 2017

10

1 reference

10 August 2017

10

1 reference

10 August 2017

e0141576

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Creative Commons Attribution 4.0 International

10 August 2017

start time

29 October 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

Experimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Coexistence of twisted, plectonemic, and melted DNA in small topological domains.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Magnetic tweezers measurements of the nanomechanical stability of DNA against denaturation at various conditions of pH and ionic strength.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Sequence dependence of DNA bending rigidity

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Torsional regulation of hRPA-induced unwinding of double-stranded DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Behavior of supercoiled DNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Sites of predicted stress-induced DNA duplex destabilization occur preferentially at regulatory loci

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

The writhing number of a space curve

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Extensive unwinding of the plasmid template during staged enzymatic initiation of DNA replication from the origin of the Escherichia coli chromosome.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Negative supercoiling induces spontaneous unwinding of a bacterial promoter

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

The DNA unwinding element: a novel, cis-acting component that facilitates opening of the Escherichia coli replication origin

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Supercoiling is essential for the formation and stability of the initiation complex at the divergent malEp and malKp promoters

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Force-dependent melting of supercoiled DNA at thermophilic temperatures

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Brownian dynamics simulations of sequence-dependent duplex denaturation in dynamically superhelical DNA.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Sequence-dependent elastic properties of DNA.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Theoretical and experimental study of DNA helix-coil transition in acidic and alkaline medium.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Dependence of DNA helix flexibility on base composition

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

DNA: sequence, structure and supercoiling. The twentieth Colworth medal lecture

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

DNA gyrase is a host factor required for transposition of Tn5.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Single-molecule study of the DNA denaturation phase transition in the force-torsion space

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4625975

Rod models of DNA: sequence-dependent anisotropic elastic modelling of local bending phenomena

24 September 2018

1 reference

12 December 2020

Negative Supercoiling Increases the Sensitivity of Plasmid DNA to Single-strand Break Induction by X-rays

1 reference

12 December 2020

Energetics of the strand separation transition in superhelical DNA

1 reference

12 December 2020

DNA melting on yeast RNA polymerase II promoters

1 reference

12 December 2020

10.1371/JOURNAL.PONE.0141576

Identifiers

DOI

1 reference

10 August 2017

0 references

1 reference

PMC publication ID

4625975

10 August 2017

PubMed publication ID

26513573

1 reference

PMC publication ID

4625975