(Q35547868)

8 August 2017

title

Experimental phase diagram of negatively supercoiled DNA measured by magnetic tweezers and fluorescence (English)

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8 August 2017

Rifka Vlijm

1

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Alireza Mashaghi

object named as

Alireza Mashaghi

2

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Mauro Modesti

object named as

Mauro Modesti

4

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Cees Dekker

object named as

Cees Dekker

5

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author name string

Stéphanie Bernard

3

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8 August 2017

language of work or name

English

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publication date

1 February 2015

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8 August 2017

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8 August 2017

volume

7

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8 August 2017

issue

7

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8 August 2017

page(s)

3205-3216

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Crystal structure analysis of a complete turn of B-DNA

8 August 2017

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Transcription-dependent dynamic supercoiling is a short-range genomic force

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How topological constraints facilitate growth and stability of bubbles in DNA

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Molecular structure of a left-handed double helical DNA fragment at atomic resolution

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The chemistry and biology of left-handed Z-DNA.

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Supercoil-driven DNA structures regulate genetic transactions

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Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures

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Structural transitions and elasticity from torque measurements on DNA.

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Stretched and overwound DNA forms a Pauling-like structure with exposed bases

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Behavior of supercoiled DNA.

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On structural transitions, thermodynamic equilibrium, and the phase diagram of DNA and RNA duplexes under torque and tension

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The elasticity of a single supercoiled DNA molecule

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Mapping the phase diagram of the writhe of DNA nanocircles using atomistic molecular dynamics simulations

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In the absence of writhe, DNA relieves torsional stress with localized, sequence-dependent structural failure to preserve B-form

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Underwound DNA under tension: structure, elasticity, and sequence-dependent behaviors

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Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

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Minute negative superhelicity is sufficient to induce the B-Z transition in the presence of low tension

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A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

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Coexistence of twisted, plectonemic, and melted DNA in small topological domains.

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Abrupt buckling transition observed during the plectoneme formation of individual DNA molecules.

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Replication Protein A (RPA): The Eukaryotic SSB

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Single-molecule fluorescence probes dynamics of barrier crossing

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Interaction of the Zalpha domain of human ADAR1 with a negatively supercoiled plasmid visualized by atomic force microscopy

21 January 2018

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Proteolytic dissection of Zab, the Z-DNA-binding domain of human ADAR1.

21 January 2018

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DNA overwinds when stretched

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Dynamics of DNA Supercoils

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21 January 2018

Identifiers

DOI

10.1039/C4NR04332D

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8 August 2017

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