(Q39985020)

16 September 2017

Interaction of the Zalpha domain of human ADAR1 with a negatively supercoiled plasmid visualized by atomic force microscopy (English)

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16 September 2017

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Alexander Y Lushnikov

1

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16 September 2017

Bernard A Brown

2

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16 September 2017

Elena A Oussatcheva

3

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16 September 2017

Vladimir N Potaman

4

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16 September 2017

Richard R Sinden

5

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16 September 2017

Yuri L Lyubchenko

6

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16 September 2017

1 September 2004

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16 September 2017

Nucleic Acids Research

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16 September 2017

32

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16 September 2017

4704-4712

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16 September 2017

15

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describes a project that uses

16 September 2017

atomic force microscopy

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The solution structure of the N-terminal domain of E3L shows a tyrosine conformation that may explain its reduced affinity to Z-DNA in vitro

inferred from title

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Evidence that vaccinia virulence factor E3L binds to Z-DNA in vivo: Implications for development of a therapy for poxvirus infection

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

A role for Z-DNA binding in vaccinia virus pathogenesis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Structure of the DLM-1-Z-DNA complex reveals a conserved family of Z-DNA-binding proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

The zalpha domain of the editing enzyme dsRNA adenosine deaminase binds left-handed Z-RNA as well as Z-DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Structure and dynamics of three-way DNA junctions: atomic force microscopy studies

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Left-handed Z-DNA: structure and function

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

The solution structure of the Zalpha domain of the human RNA editing enzyme ADAR1 reveals a prepositioned binding surface for Z-DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Crystal structure of the Zalpha domain of the human editing enzyme ADAR1 bound to left-handed Z-DNA

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

The Zalpha domain from human ADAR1 binds to the Z-DNA conformer of many different sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

A Z-DNA binding domain present in the human editing enzyme, double-stranded RNA adenosine deaminase

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Supercoiling-dependent flexibility of adenosine-tract-containing DNA detected by a topological method.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

The effect of ionic conditions on DNA helical repeat, effective diameter and free energy of supercoiling

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Visualization of supercoiled DNA with atomic force microscopy in situ

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Effects of Na+ and Mg2+ on the structures of supercoiled DNAs: comparison of simulations with experiments

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Transcription of the human corticotropin-releasing hormone gene in NPLC cells is correlated with Z-DNA formation

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Atomic force microscopy of DNA and bacteriophage in air, water and propanol: the role of adhesion forces

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Left-handed Z-DNA and in vivo supercoil density in the Escherichia coli chromosome

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

The transitions between left- and right-handed forms of poly(dG-dC).

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

The sequence (dC-dA)n X (dG-dT)n forms left-handed Z-DNA in negatively supercoiled plasmids

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

A computer aided thermodynamic approach for predicting the formation of Z-DNA in naturally occurring sequences

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Supercoiling of the DNA template during transcription

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Transcription of human c-myc in permeabilized nuclei is associated with formation of Z-DNA in three discrete regions of the gene

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Proteolytic dissection of Zab, the Z-DNA-binding domain of human ADAR1.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Silatrane-based surface chemistry for immobilization of DNA, protein-DNA complexes and other biological materials

25 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Structure and dynamics of supercoil-stabilized DNA cruciforms.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Stabilization of Z DNA in vivo by localized supercoiling.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Torsionally tuned cruciform and Z-DNA probes for measuring unrestrained supercoiling at specific sites in DNA of living cells

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

Cloning of DLM-1, a novel gene that is up-regulated in activated macrophages, using RNA differential display.

17 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=516073

A cruciform structural transition provides a molecular switch for chromosome structure and dynamics

20 August 2018

1 reference

12 December 2020

A novel single-molecule study to determine protein--protein association constants

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12 December 2020

Left-handed DNA in restriction fragments and a recombinant plasmid

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12 December 2020

Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions

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12 December 2020

Salt-induced transition between two double-helical forms of oligo (dC-dG)

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12 December 2020

Thermodynamic parameters are sequence-dependent for the supercoil-induced B to Z transition in recombinant plasmids

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12 December 2020

Rate of B to Z structural transition of supercoiled DNA

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12 December 2020

Reduced 4,5',8-trimethylpsoralen cross-linking of left-handed Z-DNA stabilized by DNA supercoiling

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12 December 2020

Left-handed Z-DNA Helices in Polymers, Restriction Fragments, and Recombinant Plasmids

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12 December 2020

Crystallization and preliminary studies of the DNA-binding domain Za from ADAR1 complexed to left-handed DNA

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12 December 2020

Influence of global DNA topology on cruciform formation in supercoiled DNA

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKH810

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16 September 2017

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16 September 2017

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