(Q35832097)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

title

Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

0 references

13

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

10

Thomas R Ioerger

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

author name string

Scarlet S Shell

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Jing Wang

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Pascal Lapierre

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Mushtaq Mir

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Michael R Chase

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Margaret M Pyle

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Richa Gawande

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Rushdy Ahmad

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

David A Sarracino

9

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Sarah M Fortune

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Keith M Derbyshire

12

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

Todd A Gray

14

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

publication date

4 November 2015

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

volume

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

issue

11

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

page(s)

e1005641

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

Creative Commons Attribution 4.0 International

29 February 2020

copyright license

start time

4 November 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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27 July 2018

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RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti

27 July 2018

1 reference

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Mycobacterial RNA polymerase requires a U-tract at intrinsic terminators and is aided by NusG at suboptimal terminators

27 July 2018

1 reference

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27 July 2018

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Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique

27 July 2018

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Genome-wide mapping of transcriptional start sites defines an extensive leaderless transcriptome in Mycobacterium tuberculosis

27 July 2018

1 reference

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27 July 2018

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Gene expression regulation by upstream open reading frames and human disease

27 July 2018

1 reference

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Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021.

27 July 2018

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Comparison of mRNA features affecting translation initiation and reinitiation.

27 July 2018

1 reference

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Selective translation during stress in Escherichia coli

27 July 2018

1 reference

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Control of a Salmonella virulence locus by an ATP-sensing leader messenger RNA

27 July 2018

1 reference

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Structural diversity in bacterial ribosomes: mycobacterial 70S ribosome structure reveals novel features

27 July 2018

1 reference

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Selective ribosome profiling reveals the cotranslational chaperone action of trigger factor in vivo

27 July 2018

1 reference

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Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions

27 July 2018

1 reference

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Selective translation of leaderless mRNAs by specialized ribosomes generated by MazF in Escherichia coli.

27 July 2018

1 reference

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Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor.

27 July 2018

1 reference

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Nascent polypeptide sequences that influence ribosome function

27 July 2018

1 reference

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EspA acts as a critical mediator of ESX1-dependent virulence in Mycobacterium tuberculosis by affecting bacterial cell wall integrity

27 July 2018

1 reference

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A single-base resolution map of an archaeal transcriptome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Begin at the beginning: evolution of translational initiation

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Small membrane proteins found by comparative genomics and ribosome binding site models.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Ribosomes bind leaderless mRNA in Escherichia coli through recognition of their 5'-terminal AUG

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Translational termination-re-initiation in viral systems

27 July 2018

1 reference

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Translation initiation with 70S ribosomes: an alternative pathway for leaderless mRNAs

27 July 2018

1 reference

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Regulatory nascent peptides in the ribosomal tunnel

27 July 2018

1 reference

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The initiation codon affects ribosome binding and translational efficiency in Escherichia coli of cI mRNA with or without the 5' untranslated leader

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Studies of promoter recognition and start site selection by T7 RNA polymerase using a comprehensive collection of promoter variants

27 July 2018

1 reference

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Selective stimulation of translation of leaderless mRNA by initiation factor 2: evolutionary implications for translation

27 July 2018

1 reference

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DNA sequence elements located immediately upstream of the -10 hexamer in Escherichia coli promoters: a systematic study

27 July 2018

1 reference

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Discrimination of 5'-terminal start codons by translation initiation factor 3 is mediated by ribosomal protein S1.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Evidence for in vivo ribosome recycling, the fourth step in protein biosynthesis

27 July 2018

1 reference

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Downstream box-anti-downstream box interactions are dispensable for translation initiation of leaderless mRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Distinctive features of the 5'-terminal sequences of the human mitochondrial mRNAs

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Lac repressor can be fused to β-galactosidase

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

The 3'-terminal sequence of Escherichia coli 16S ribosomal RNA: complementarity to nonsense triplets and ribosome binding sites

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Bacteriophage P2 late promoters. II. Comparison of the four late promoter sequences

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Autogenous regulation of the gene for transcription termination factor rho in Escherichia coli: localization and function of its attenuators

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Scanning model for translational reinitiation in eubacteria.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Translation of the prophage lambda cl transcript

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

An expanding universe of small proteins

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Translation initiation: variations in the mechanism can be anticipated

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Preferential selection of the 5'-terminal start codon on leaderless mRNAs by mammalian mitochondrial ribosomes

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Characterization of mature mitochondrial transcripts in Drosophila, and the implications for the tRNA punctuation model in arthropods

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

A novel mechanism for translation initiation operates in haloarchaea.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Evolution and the universality of the mechanism of initiation of protein synthesis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Evidence for the translation initiation of leaderless mRNAs by the intact 70 S ribosome without its dissociation into subunits in eubacteria.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Leaderless mRNAs bind 70S ribosomes more strongly than 30S ribosomal subunits in Escherichia coli

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Effects of ribosomal proteins S1, S2 and the DeaD/CsdA DEAD-box helicase on translation of leaderless and canonical mRNAs in Escherichia coli.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Anatomy of Escherichia coli ribosome binding sites.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Translation initiation factor 3 antagonizes authentic start codon selection on leaderless mRNAs

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4633059

Expression, purification and operator binding of the transposon Tn1721-encoded Tet repressor

24 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26536359

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

An AUG initiation codon, not codon-anticodon complementarity, is required for the translation of unleadered mRNA in Escherichia coli

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/26536359

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.1005641

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json

29 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26536359%20AND%20SRC:MED&resulttype=core&format=json