(Q35834410)

10 August 2017

Adaptation to High Ethanol Reveals Complex Evolutionary Pathways (English)

1 reference

10 August 2017

Wim Meert

9

0 references

Jacek Kominek

Jacek Kominek

2

0 references

Alexander Deluna

Alexander DeLuna

13

0 references

Vera van Noort

Vera Van Noort

14

0 references

Kathleen Marchal

Kathleen Marchal

12

0 references

Kevin J Verstrepen

Kevin J Verstrepen

16

0 references

Elisa van der Zande

Elisa van der Zande

8

0 references

Ahmed Arslan

Ahmed Arslan

6

0 references

author name string

Karin Voordeckers

1

1 reference

10 August 2017

Anupam Das

3

1 reference

10 August 2017

Adriana Espinosa-Cantú

4

1 reference

10 August 2017

Dries De Maeyer

5

1 reference

10 August 2017

Michiel Van Pee

7

1 reference

10 August 2017

Yudi Yang

10

1 reference

10 August 2017

Bo Zhu

11

1 reference

10 August 2017

Rob Jelier

15

1 reference

10 August 2017

6 November 2015

1 reference

10 August 2017

1 reference

10 August 2017

11

1 reference

10 August 2017

11

1 reference

10 August 2017

e1005635

1 reference

Creative Commons Attribution 4.0 International

10 August 2017

start time

6 November 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

describes a project that uses

Cytoscape

Cytoscape

2 references

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

The fitness consequences of aneuploidy are driven by condition-dependent gene effects

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11 July 2018

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Large-scale robot-assisted genome shuffling yields industrial Saccharomyces cerevisiae yeasts with increased ethanol tolerance

11 July 2018

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Polyploidy can drive rapid adaptation in yeast

11 July 2018

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Comparative genomics of Saccharomyces cerevisiae natural isolates for bioenergy production

11 July 2018

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Phenotypic evaluation of natural and industrial Saccharomyces yeasts for different traits desirable in industrial bioethanol production

11 July 2018

1 reference

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Genetic architecture of ethanol-responsive transcriptome variation in Saccharomyces cerevisiae strains

11 July 2018

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Strength of selection pressure is an important parameter contributing to the complexity of antibiotic resistance evolution

11 July 2018

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Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria

11 July 2018

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Taming wild yeast: potential of conventional and nonconventional yeasts in industrial fermentations

11 July 2018

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Improving industrial yeast strains: exploiting natural and artificial diversity

11 July 2018

1 reference

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Improved linkage analysis of Quantitative Trait Loci using bulk segregants unveils a novel determinant of high ethanol tolerance in yeast

11 July 2018

1 reference

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Molecular specificity, convergence and constraint shape adaptive evolution in nutrient-poor environments

11 July 2018

1 reference

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The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection

11 July 2018

1 reference

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Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment

11 July 2018

1 reference

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Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations

11 July 2018

1 reference

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Mutation rates, spectra, and genome-wide distribution of spontaneous mutations in mismatch repair deficient yeast

11 July 2018

1 reference

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PheNetic: network-based interpretation of unstructured gene lists in E. coli

11 July 2018

1 reference

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Ancient evolutionary trade-offs between yeast ploidy states

11 July 2018

1 reference

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Parallel evolutionary dynamics of adaptive diversification in Escherichia coli

11 July 2018

1 reference

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Chromosomal duplication is a transient evolutionary solution to stress.

11 July 2018

1 reference

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A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3

11 July 2018

1 reference

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Turbidostat culture of Saccharomyces cerevisiae W303-1A under selective pressure elicited by ethanol selects for mutations in SSD1 and UTH1

11 July 2018

1 reference

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Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Cryptic fitness advantage: diploids invade haploid populations despite lacking any apparent advantage as measured by standard fitness assays

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

The aneuploidy paradox: costs and benefits of an incorrect karyotype

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Sucrose utilization in budding yeast as a model for the origin of undifferentiated multicellularity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Aneuploidy drives genomic instability in yeast

11 July 2018

1 reference

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Hunger artists: yeast adapted to carbon limitation show trade-offs under carbon sufficiency

11 July 2018

1 reference

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Parallel evolution of the make-accumulate-consume strategy in Saccharomyces and Dekkera yeasts.

11 July 2018

1 reference

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A framework for variation discovery and genotyping using next-generation DNA sequencing data

11 July 2018

1 reference

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Haploids adapt faster than diploids across a range of environments

11 July 2018

1 reference

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Control of transcription by cell size

11 July 2018

1 reference

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Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast

11 July 2018

1 reference

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Transcriptome analysis of parallel-evolved Escherichia coli strains under ethanol stress

11 July 2018

1 reference

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Exploiting natural variation in Saccharomyces cerevisiae to identify genes for increased ethanol resistance

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Dr Jekyll and Mr Hyde: role of aneuploidy in cellular adaptation and cancer

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Mechanisms of ethanol tolerance in Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Dissection of genetically complex traits with extremely large pools of yeast segregants

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Genome evolution and adaptation in a long-term experiment with Escherichia coli

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Genome-wide mutational diversity in an evolving population of Escherichia coli

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Tolerance and stress response to ethanol in the yeast Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Genome-wide identification of Saccharomyces cerevisiae genes required for maximal tolerance to ethanol

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Fast and accurate short read alignment with Burrows-Wheeler transform

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Plants with double genomes might have had a better chance to survive the Cretaceous-Tertiary extinction event

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

The repertoire and dynamics of evolutionary adaptations to controlled nutrient-limited environments in yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Slow growth induces heat-shock resistance in normal and respiratory-deficient yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Molecular characterization of clonal interference during adaptive evolution in asexual populations of Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

STRING 8--a global view on proteins and their functional interactions in 630 organisms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

A genome-wide view of the spectrum of spontaneous mutations in yeast.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Coevolution with viruses drives the evolution of bacterial mutation rates.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Consequences of genome duplication

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Coordination of growth rate, cell cycle, stress response, and metabolic activity in yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Effects of aneuploidy on cellular physiology and cell division in haploid yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Genetic dissection of ethanol tolerance in the budding yeast Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Genomic convergence toward diploidy in Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

The genome-wide screening of yeast deletion mutants to identify the genes required for tolerance to ethanol and other alcohols

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

The YEASTRACT database: a tool for the analysis of transcription regulatory associations in Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

11 July 2018

1 reference

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Resurrecting ancestral alcohol dehydrogenases from yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Evolutionary engineering of multiple-stress resistant Saccharomyces cerevisiae.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Haploidy, diploidy and evolution of antifungal drug resistance in Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Defects arising from whole-genome duplications in Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Genomic screen for vacuolar protein sorting genes in Saccharomyces cerevisiae

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

A second set of loxP marker cassettes for Cre-mediated multiple gene knockouts in budding yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Genomic expression programs in the response of yeast cells to environmental changes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

KEGG: kyoto encyclopedia of genes and genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Mutator phenotypes of yeast strains heterozygous for mutations in the MSH2 gene.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Molecular evidence for an ancient duplication of the entire yeast genome

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Evolution of high mutation rates in experimental populations of E. coli

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

A new efficient gene disruption cassette for repeated use in budding yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Rapid genome change in synthetic polyploids of Brassica and its implications for polyploid evolution

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

A study of ethanol tolerance in yeast.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Evolving a 24-hr oscillator in budding yeast

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Generation and characterisation of stable ethanol-tolerant mutants of Saccharomyces cerevisiae

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Aneuploidy underlies rapid adaptive evolution of yeast cells deprived of a conserved cytokinesis motor

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Genome-wide identification of genes required for growth of Saccharomyces cerevisiae under ethanol stress.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Effect of ethanol on cell growth of budding yeast: genes that are important for cell growth in the presence of ethanol.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Global gene expression during short-term ethanol stress in Saccharomyces cerevisiae

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

The fate of competing beneficial mutations in an asexual population.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4636377

Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut

24 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1005635

Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif Usage

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1005635

Genome-wide genetic analysis of polyploidy in yeast

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1005635

The evolution of low mutation rates in experimental mutator populations of Saccharomyces cerevisiae

21 January 2018

1 reference

12 December 2020

An evolutionary advantage of haploidy in large yeast populations

1 reference

12 December 2020

Exposing the fitness contribution of duplicated genes

1 reference

12 December 2020

Ploidy regulation of gene expression

1 reference

12 December 2020

10.1371/JOURNAL.PGEN.1005635

Identifiers

DOI

1 reference

10 August 2017

1 reference

10 August 2017

PubMed publication ID

26545090

1 reference