(Q35844611)

10 August 2017

HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes (English)

1 reference

10 August 2017

1 reference

1 reference

4

1 reference

10 August 2017

Hilary P Browne

2

0 references

Sam Forster

Samuel C Forster

1

0 references

Alex Mitchell

Alex Mitchell

6

0 references

Hubert Denise

Hubert Denise

5

0 references

Robert D. Finn

Robert D Finn

7

0 references

Trevor Lawley

8

Trevor D Lawley

1 reference

10 August 2017

Nitin Kumar

3

1 reference

PMC publication ID

4702862

10 August 2017

language of work or name

English

0 references

publication date

17 November 2015

1 reference

10 August 2017

Nucleic Acids Research

1 reference

10 August 2017

44

1 reference

10 August 2017

D1

1 reference

10 August 2017

D604-9

1 reference

Creative Commons Attribution 4.0 International

10 August 2017

start time

15 November 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Systematic discovery of probiotics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Content discovery and retrieval services at the European Nucleotide Archive

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Kraken: ultrafast metagenomic sequence classification using exact alignments

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

MetaRef: a pan-genomic database for comparative and community microbial genomics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

IMG 4 version of the integrated microbial genomes comparative analysis system

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

EBI metagenomics--a new resource for the analysis and archiving of metagenomic data

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Bacteriotherapy for the treatment of intestinal dysbiosis caused by Clostridium difficile infection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

A framework for human microbiome research

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Structure, function and diversity of the healthy human microbiome

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Evidence for several waves of global transmission in the seventh cholera pandemic

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Evolutionary dynamics of Clostridium difficile over short and long time scales

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

A human gut microbial gene catalogue established by metagenomic sequencing

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

The link between phylogeny and virulence in Escherichia coli extraintestinal infection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Members of the human gut microbiota involved in recovery from Vibrio cholerae infection

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Trimmomatic: a flexible trimmer for Illumina sequence data

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

InterProScan 5: genome-scale protein function classification

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

Emergence and global spread of epidemic healthcare-associated Clostridium difficile

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

FragGeneScan: predicting genes in short and error-prone reads

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

MetaBioME: a database to explore commercially useful enzymes in metagenomic datasets

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

A core gut microbiome in obese and lean twins

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

BLAT—The BLAST-Like Alignment Tool

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4702862

24 September 2018

Identifiers

DOI

10.1093/NAR/GKV1216

1 reference

journals/nar/ForsterBKHDMFL16

10 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

PMC publication ID

4702862

10 August 2017

PubMed publication ID

26578596

1 reference

PMC publication ID

4702862