(Q35863141)

10 August 2017

Wind and sunlight shape microbial diversity in surface waters of the North Pacific Subtropical Gyre (English)

1 reference

10 August 2017

1 reference

1 reference

4

1 reference

10 August 2017

Frank O Aylward

2

0 references

Matthew J. Church

series ordinal

5

object named as

Matthew J Church

1 reference

10 August 2017

6

Edward F DeLong

1 reference

10 August 2017

3

John M Eppley

1 reference

10 August 2017

Jessica A Bryant

1

1 reference

10 August 2017

8 December 2015

1 reference

10 August 2017

1 reference

10 August 2017

10

1 reference

10 August 2017

6

1 reference

10 August 2017

1308-1322

1 reference

Creative Commons Attribution-NonCommercial-NoDerivs 4.0 International

10 August 2017

start time

8 December 2015

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Ocean plankton. Structure and function of the global ocean microbiome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Microbial community transcriptional networks are conserved in three domains at ocean basin scales.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Microbial oceanography and the Hawaii Ocean Time-series programme

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Ecogenomic sensor reveals controls on N2-fixing microorganisms in the North Pacific Ocean

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Vertical profiles of bacteria in the tropical and subarctic oceans revealed by pyrosequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Away from darkness: a review on the effects of solar radiation on heterotrophic bacterioplankton activity

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Global marine bacterial diversity peaks at high latitudes in winter

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Pole-to-pole biogeography of surface and deep marine bacterial communities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Evaluation of 16S rDNA-based community profiling for human microbiome research

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Seasonality in ocean microbial communities.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Predictable and efficient carbon sequestration in the North Pacific Ocean supported by symbiotic nitrogen fixation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Exploration of community traits as ecological markers in microbial metagenomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

The phylogenetic diversity of metagenomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Defining seasonal marine microbial community dynamics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Ocean time-series reveals recurring seasonal patterns of virioplankton dynamics in the northwestern Sargasso Sea.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Non-random assembly of bacterioplankton communities in the subtropical north pacific ocean.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Proteinortho: detection of (co-)orthologs in large-scale analysis.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Removing noise from pyrosequenced amplicons

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

The taxonomic and functional diversity of microbes at a temperate coastal site: a 'multi-omic' study of seasonal and diel temporal variation

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Search and clustering orders of magnitude faster than BLAST

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Temporal dynamics of Prochlorococcus ecotypes in the Atlantic and Pacific oceans

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Picante: R tools for integrating phylogenies and ecology

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

QIIME allows analysis of high-throughput community sequencing data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Development and quantitative analyses of a universal rRNA-subtraction protocol for microbial metatranscriptomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Parameters for accurate genome alignment

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

PyNAST: a flexible tool for aligning sequences to a template alignment

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Microbial community structure in the North Pacific ocean

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

A new phylogenetic diversity measure generalizing the shannon index and its application to phyllostomid bats

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Seasonality and vertical structure of microbial communities in an ocean gyre

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

The radiocarbon signature of microorganisms in the mesopelagic ocean

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

WGCNA: an R package for weighted correlation network analysis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Seasonal dynamics of SAR11 populations in the euphotic and mesopelagic zones of the northwestern Sargasso Sea.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Nitrogen fixation in an anticyclonic eddy in the oligotrophic North Pacific Ocean

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Resourceful heterotrophs make the most of light in the coastal ocean

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Eddy/wind interactions stimulate extraordinary mid-ocean plankton blooms

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

MetaGene: prokaryotic gene finding from environmental genome shotgun sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Annually reoccurring bacterial communities are predictable from ocean conditions

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

A general framework for weighted gene co-expression network analysis

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Quantifying archaeal community autotrophy in the mesopelagic ocean using natural radiocarbon.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Community genomics among stratified microbial assemblages in the ocean's interior

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

UniFrac: a new phylogenetic method for comparing microbial communities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Global iron connections between desert dust, ocean biogeochemistry, and climate

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

ARB: a software environment for sequence data

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

KEGG: kyoto encyclopedia of genes and genomes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Seasonal and spatial variability of bacterial and archaeal assemblages in the coastal waters near Anvers Island, Antarctica

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

A novel delta-subdivision proteobacterial lineage from the lower ocean surface layer

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Detection of stratified microbial populations related to Chlorobium and Fibrobacter species in the Atlantic and Pacific oceans.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

16S rRNA genes reveal stratified open ocean bacterioplankton populations related to the Green Non-Sulfur bacteria

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Microbiology. Genomes from metagenomics.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Distinct dissolved organic matter sources induce rapid transcriptional responses in coexisting populations of Prochlorococcus, Pelagibacter and the OM60 clade.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Time-series analyses of Monterey Bay coastal microbial picoplankton using a 'genome proxy' microarray

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Niche partitioning among Prochlorococcus ecotypes along ocean-scale environmental gradients.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5029195

Photosynthetic picoplankton community structure in the subtropical North Pacific Ocean near Hawaii (station ALOHA)

24 September 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

Bacterial chemolithotrophy in the ocean is associated with sinking particles

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

Temporal variability in dissolved phosphorus concentrations in the subtropical North Pacific Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

Seasonal variability in the phytoplankton community of the North Pacific Subtropical Gyre

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

Influence of light and temperature on Prochlorococcus ecotype distributions in the Atlantic Ocean

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

Global correlations between winds and ocean chlorophyll

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

Daily to decadal variability of size-fractionated iron and iron-binding ligands at the Hawaii Ocean Time-series Station ALOHA

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

7 January 2021

Temporal and spatial response of bacterioplankton lineages to annual convective overturn at the Bermuda Atlantic Time-series Study site

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

7 January 2021

A multivariate analysis of planktonic interactions in the eastern tropical North Pacific

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

7 January 2021

Global diversity and biogeography of deep-sea pelagic prokaryotes

1 reference

https://api.crossref.org/works/10.1038%2FISMEJ.2015.221

7 January 2021

Identifiers

DOI

10.1038/ISMEJ.2015.221

1 reference

PMC publication ID

5029195

Dimensions Publication ID

10 August 2017

0 references

1 reference

PMC publication ID

5029195

10 August 2017

PubMed publication ID

26645474

1 reference

PMC publication ID

5029195