(Q43791398)

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Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

scientific article published on 18 September 2013

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scholarly article

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Europe PubMed Central

PubMed publication ID

26 November 2017

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities (English)

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Europe PubMed Central

PubMed publication ID

26 November 2017

amplicon sequencing

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based on heuristic

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based on heuristic

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Europe PubMed Central

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26 November 2017

Shinichi Sunagawa

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Europe PubMed Central

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Europe PubMed Central

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26 November 2017

Silvia G. Acinas

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Europe PubMed Central

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26 November 2017

Stefanie Kandels-Lewis

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object named as

Stefanie Kandels-Lewis

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Europe PubMed Central

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26 November 2017

16

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Eric Karsenti

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Europe PubMed Central

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26 November 2017

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object named as

Pascal Hingamp

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Francisco M Cornejo-Castillo

object named as

Francisco M Cornejo-Castillo

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Guillem Salazar

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Guillem Salazar

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Gipsi Lima-Mendez

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Gipsi Lima-Mendez

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Isabel Ferrera

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object named as

Hugo Sarmento

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Julie Poulain

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object named as

Jeroen Raes

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Patrick Wincker

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Patrick Wincker

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Europe PubMed Central

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26 November 2017

Olivier Jaillon

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Olivier Jaillon

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Europe PubMed Central

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26 November 2017

Colomban de Vargas

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Colomban de Vargas

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Europe PubMed Central

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26 November 2017

author name string

Hiroyuki Ogata

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Europe PubMed Central

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26 November 2017

publication date

18 September 2013

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Europe PubMed Central

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26 November 2017

Environmental Microbiology

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26 November 2017

16

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9

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26 November 2017

2659-2671

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Europe PubMed Central

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26 November 2017

PCR-induced sequence artifacts and bias: insights from comparison of two 16S rRNA clone libraries constructed from the same sample.

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Microbial community phylogenetic and trait diversity declines with depth in a marine oxygen minimum zone

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA.

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

The microbial ocean from genomes to biomes

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Experimental factors affecting PCR-based estimates of microbial species richness and evenness.

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

The microbial engines that drive Earth's biogeochemical cycles.

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Metagenomes of Mediterranean Coastal Lagoons

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Field guide to next-generation DNA sequencers

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Amplification by PCR artificially reduces the proportion of the rare biosphere in microbial communities

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

OTU analysis using metagenomic shotgun sequencing data

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Evaluation of next generation sequencing platforms for population targeted sequencing studies

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Ribosomal DNA: Molecular Evolution and Phylogenetic Inference

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Polymerase chain reaction primers miss half of rRNA microbial diversity

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Accuracy and quality of massively parallel DNA pyrosequencing

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

A holistic approach to marine eco-systems biology

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Short pyrosequencing reads suffice for accurate microbial community analysis

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Environmental microbiology through the lens of high-throughput DNA sequencing: synopsis of current platforms and bioinformatics approaches

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Sequence-specific error profile of Illumina sequencers

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

A molecular view of microbial diversity and the biosphere

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Marine microbial diversity: can it be determined?

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

The rare bacterial biosphere

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Accurate determination of microbial diversity from 454 pyrosequencing data

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Removing noise from pyrosequenced amplicons

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Unlocking short read sequencing for metagenomics

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Microbial diversity in the deep sea and the underexplored "rare biosphere"

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Marine bacteria exhibit a bipolar distribution

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Analysis of 23S rRNA genes in metagenomes - a case study from the Global Ocean Sampling Expedition

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Global patterns of bacterial beta-diversity in seafloor and seawater ecosystems

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https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA

1 reference

https://api.crossref.org/works/10.1111%2F1462-2920.12250

21 January 2018

Identifiers

10.1111/1462-2920.12250

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 November 2017

ResearchGate publication ID

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