(Q35907571)

English

Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga).

scientific article published on 28 January 2016

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves, Genus: Piranga). (English)

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

0 references

1 reference

based on heuristic

inferred from title

0 references

1 reference

based on heuristic

inferred from title

Joseph D Manthey

1

0 references

Luke C Campillo

2

0 references

3

0 references

Robert G. Moyle

4

object named as

Robert G Moyle

1 reference

Europe PubMed Central

http://europepmc.org/abstract/PMC/5841389

14 June 2018

author name string

Joseph D Manthey

1

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

Luke C Campillo

2

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

Kevin J Burns

3

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

publication date

28 January 2016

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

Systematic Biology

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

65

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

4

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

640-650

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

Avoiding Missing Data Biases in Phylogenomic Inference: An Empirical Study in the Landfowl (Aves: Galliformes).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

PHYLUCE is a software package for the analysis of conserved genomic loci

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Sequence capture of ultraconserved elements from bird museum specimens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Isolation by environment in White-breasted Nuthatches (Sitta carolinensis) of the Madrean Archipelago sky islands: a landscape genomics approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Phylogenomics of phrynosomatid lizards: conflicting signals from sequence capture versus restriction site associated DNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Target enrichment of ultraconserved elements from arthropods provides a genomic perspective on relationships among Hymenoptera

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Quartet inference from SNP data under the coalescent model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

BEAST 2: a software platform for Bayesian evolutionary analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

A Phylogenomic Perspective on the Radiation of Ray-Finned Fishes Based upon Targeted Sequencing of Ultraconserved Elements (UCEs)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

RADseq underestimates diversity and introduces genealogical biases due to nonrandom haplotype sampling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

A phylogeny of birds based on over 1,500 loci collected by target enrichment and high-throughput sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Deep phylogeographic structure and environmental differentiation in the carnivorous plant Sarracenia alata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Inferring phylogenies from RAD sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Multiplexed shotgun genotyping for rapid and efficient genetic mapping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

A maximum pseudo-likelihood approach for estimating species trees under the coalescent model

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Bayesian analysis of molecular variance in pyrosequences quantifies population genetic structure across the genome of Lycaeides butterflies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Bayesian inference of species trees from multilocus data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Coalescent methods for estimating phylogenetic trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Calculating bootstrap probabilities of phylogeny using multilocus sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

BEAST: Bayesian evolutionary analysis by sampling trees

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Defining a monophyletic Cardinalini: a molecular perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

27 July 2018

ASTRAL: genome-scale coalescent-based species tree estimation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

24 September 2018

Empirical assessment of RAD sequencing for interspecific phylogeny

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

24 September 2018

How low can you go? The effects of mutation rate on the accuracy of species-tree estimation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

24 September 2018

Stacks: building and genotyping Loci de novo from short-read sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

24 September 2018

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

24 September 2018

Full-length transcriptome assembly from RNA-Seq data without a reference genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

24 September 2018

Estimating species trees from unrooted gene trees.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

24 September 2018

New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

24 September 2018

Inference of population structure using multilocus genotype data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5841389

24 September 2018

New insights into New World biogeography: An integrated view from the phylogeny of blackbirds, cardinals, sparrows, tanagers, warblers, and allies

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW005

21 January 2018

genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

1 reference

https://api.crossref.org/works/10.1093%2FSYSBIO%2FSYW005

21 January 2018

Identifiers

10.1093/SYSBIO/SYW005

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

1 reference

Europe PubMed Central

14 June 2018

http://europepmc.org/abstract/PMC/5841389

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q35907571&oldid=1967182732"