(Q34995784)

5 August 2017

How low can you go? The effects of mutation rate on the accuracy of species-tree estimation (English)

1 reference

5 August 2017

3

L Lacey Knowles

1 reference

5 August 2017

Hayley C Lanier

1

1 reference

PubMed ID

24060367

5 August 2017

Huateng Huang

series ordinal

2

1 reference

5 August 2017

21 September 2013

1 reference

Molecular Phylogenetics and Evolution

5 August 2017

1 reference

5 August 2017

70

1 reference

5 August 2017

112-119

1 reference

Assessing the performance of single-copy genes for recovering robust phylogenies.

5 August 2017

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Bayes or bootstrap? A simulation study comparing the performance of Bayesian Markov chain Monte Carlo sampling and bootstrapping in assessing phylogenetic confidence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

The utility of amplified fragment length polymorphisms in phylogenetics: a comparison of homology within and between genomes

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Species tree of a recent radiation: the subfamily Delphininae (Cetacea, Mammalia).

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Comparison of species tree methods for reconstructing the phylogeny of bearded manakins (Aves: Pipridae, Manacus) from multilocus sequence data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Model misspecification and probabilistic tests of topology: evidence from empirical data sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Estimating species phylogeny from gene-tree probabilities despite incomplete lineage sorting: an example from Melanoplus grasshoppers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Species trees from highly incongruent gene trees in rice.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Gene tree discordance, phylogenetic inference and the multispecies coalescent

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

GENE TREE DISTRIBUTIONS UNDER THE COALESCENT PROCESS

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

High-resolution species trees without concatenation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Bayesian inference of species trees from multilocus data

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

A justification for reporting the majority-rule consensus tree in Bayesian phylogenetics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

What is the danger of the anomaly zone for empirical phylogenetics?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Sources of error inherent in species-tree estimation: impact of mutational and coalescent effects on accuracy and implications for choosing among different methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Generating samples under a Wright-Fisher neutral model of genetic variation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

MRBAYES: Bayesian inference of phylogenetic trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

A well-tested set of primers to amplify regions spread across the avian genome

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Delimiting species without monophyletic gene trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Full modeling versus summarizing gene-tree uncertainty: method choice and species-tree accuracy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Inconsistency of phylogenetic estimates from concatenated data under coalescence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

STEM: species tree estimation using maximum likelihood for gene trees under coalescence.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Is recombination a problem for species-tree analyses?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

The accuracy of species tree estimation under simulation: a comparison of methods

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Polytomies and Bayesian phylogenetic inference

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Coalescent methods for estimating phylogenetic trees

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

PhyDesign: an online application for profiling phylogenetic informativeness

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Inferring phylogeny despite incomplete lineage sorting

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Maximum likelihood estimates of species trees: how accuracy of phylogenetic inference depends upon the divergence history and sampling design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Phylogenetic informativeness profiling of 12 genes for 28 vertebrate taxa without divergence dates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Phylogenetic MCMC algorithms are misleading on mixtures of trees.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Evolution in Australasian mangrove forests: multilocus phylogenetic analysis of the Gerygone warblers (Aves: Acanthizidae)

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Heterogeneity in genetic diversity among non-coding loci fails to fit neutral coalescent models of population history

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

OrthoMaM: a database of orthologous genomic markers for placental mammal phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Profiling phylogenetic informativeness

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Taxon sampling and the optimal rates of evolution for phylogenetic inference.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Optimal selection of gene and ingroup taxon sampling for resolving phylogenetic relationships

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

The phylogenetic informativeness of nucleotide and amino acid sequences for reconstructing the vertebrate tree

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

Phylogeny of iguanian lizards inferred from 29 nuclear loci, and a comparison of concatenated and species-tree approaches for an ancient, rapid radiation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FJ.YMPEV.2013.09.006

10.1016/J.YMPEV.2013.09.006

7 January 2021

Identifiers

DOI

1 reference

5 August 2017

1 reference

PubMed ID

24060367