(Q35914169)

11 August 2017

Multiple whole genome alignments and novel biomedical applications at the VISTA portal (English)

1 reference

11 August 2017

whole genome sequencing

1 reference

1

Michael Brudno

1 reference

11 August 2017

5

Inna Dubchak

1 reference

11 August 2017

Alexander Poliakov

2

1 reference

11 August 2017

Simon Minovitsky

series ordinal

3

1 reference

11 August 2017

Igor Ratnere

series ordinal

4

1 reference

11 August 2017

language of work or name

English

0 references

publication date

8 May 2007

1 reference

11 August 2017

Nucleic Acids Research

1 reference

11 August 2017

35

1 reference

11 August 2017

Web Server issue

1 reference

11 August 2017

W669-74

1 reference

Detection of weakly conserved ancestral mammalian regulatory sequences by primate comparisons

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Database resources of the National Center for Biotechnology Information

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Primate-specific evolution of an LDLR enhancer

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Close sequence comparisons are sufficient to identify human cis-regulatory elements.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

TRANSFAC and its module TRANSCompel: transcriptional gene regulation in eukaryotes

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Gene expression patterns define key transcriptional events in cell-cycle regulation by cAMP and protein kinase A.

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

VISTA: computational tools for comparative genomics

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Aligning multiple genomic sequences with the threaded blockset aligner

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

MAVID: constrained ancestral alignment of multiple sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Automated whole-genome multiple alignment of rat, mouse, and human

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Glocal alignment: finding rearrangements during alignment

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

MATCH: A tool for searching transcription factor binding sites in DNA sequences

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Human-mouse alignments with BLASTZ

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Strategies and tools for whole-genome alignments

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Human non-synonymous SNPs: server and survey

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

BLAT—The BLAST-Like Alignment Tool

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

VISTA : visualizing global DNA sequence alignments of arbitrary length

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

TreeQ-VISTA: an interactive tree visualization tool with functional annotation query capabilities

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny.

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

Phylo-VISTA: interactive visualization of multiple DNA sequence alignments

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1933192

24 September 2018

Identifiers

DOI

10.1093/NAR/GKM279

1 reference

journals/nar/BrudnoPMRD07

11 August 2017

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

11 August 2017

PubMed publication ID

17488840

1 reference