(Q35927497)

11 August 2017

From deep TLS validation to ensembles of atomic models built from elemental motions (English)

1 reference

PMCID

4528800

From deep TLS validation to ensembles of atomic models built from elemental motions. Addenda and corrigendum.

11 August 2017

corrigendum / erratum

1 reference

10.1107/S2059798316013048

DOI

12 July 2019

http://api.crossref.org/works?select=update-to&filter=doi:10.1107/S2059798316013048

author

Paul D. Adams

series ordinal

5

1 reference

11 August 2017

James S Fraser

4

0 references

Alexandre Urzhumtsev

series ordinal

1

object named as

Alexandre Urzhumtsev

1 reference

11 August 2017

2

Pavel V Afonine

1 reference

11 August 2017

Andrew H Van Benschoten

series ordinal

3

1 reference

PMCID

4528800

11 August 2017

language of work or name

1 reference

28 July 2015

1 reference

Acta Crystallographica Section D: Biological Crystallography

11 August 2017

1 reference

11 August 2017

71

1 reference

11 August 2017

1668-1683

1 reference

11 August 2017

Pt 8

1 reference

Predicting X-ray diffuse scattering from translation-libration-screw structural ensembles

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

TLS from fundamentals to practice

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Structure of the protein core of translation initiation factor 2 in apo, GTP-bound and GDP-bound forms

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Bulk-solvent and overall scaling revisited: faster calculations, improved results

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Intersubunit Bridge Formation Governs Agonist Efficacy at Nicotinic Acetylcholine 4 2 Receptors: UNIQUE ROLE OF HALOGEN BONDING REVEALED

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Validation of crystallographic models containing TLS or other descriptions of anisotropy

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

PHENIX: a comprehensive Python-based system for macromolecular structure solution

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Optimal description of a protein structure in terms of multiple groups undergoing TLS motion

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

A molecular viewer for the analysis of TLS rigid-body motion in macromolecules

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Macromolecular TLS refinement in REFMAC at moderate resolutions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The structure and thermal motion of the B800-850 LH2 complex from Rps.acidophila at 2.0A resolution and 100K: new structural features and functionally relevant motions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Refinement of the arginine kinase transition-state analogue complex at 1.2 A resolution: mechanistic insights

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Conformational flexibility in T4 endonuclease VII revealed by crystallography: implications for substrate binding and cleavage

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Use of TLS parameters to model anisotropic displacements in macromolecular refinement

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The 1.0 A crystal structure of Ca(2+)-bound calmodulin: an analysis of disorder and implications for functionally relevant plasticity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Crystal structure of the cytosolic C2A-C2B domains of synaptotagmin III. Implications for Ca(+2)-independent snare complex interaction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Efficient anisotropic refinement of macromolecular structures using FFT

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Segmented anisotropic refinement of bovine ribonuclease A by the application of the rigid-body TLS model

2 October 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

2 October 2017

https://api.crossref.org/works/10.1107%2FS1399004715011426

Rigid protein motion as a model for crystallographic temperature factors

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The Protein Data Bank: a computer-based archival file for macromolecular structures

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Dynamics of folded proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

The segmented anisotropic refinement of monoclinic papain by the application of the rigid-body TLS model and comparison to bovine ribonuclease A.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Domain flexibility in aspartic proteinases

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Exploring the structural dynamics of the E.coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4528800

Towards automated crystallographic structure refinement with phenix.refine

24 September 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004715011426

21 January 2018

The Protein Data Bank

1 reference

https://api.crossref.org/works/10.1107%2FS1399004715011426

On the handling of atomic anisotropic displacement parameters

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004715011426

The Computational Crystallography Toolbox: crystallographic algorithms in a reusable software framework

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004715011426

TLSANL: TLS parameter-analysis program for segmented anisotropic refinement of macromolecular structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1107%2FS1399004715011426

10.1107/S1399004715011426

21 January 2018

Identifiers

DOI

1 reference

11 August 2017

1 reference

11 August 2017

1 reference

PMCID

4528800