(Q35929064)

English

Metagenomic analysis of rumen microbial population in dairy heifers fed a high grain diet supplemented with dicarboxylic acids or polyphenols.

scientific article published on 19 February 2016

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scholarly article

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Metagenomic analysis of rumen microbial population in dairy heifers fed a high grain diet supplemented with dicarboxylic acids or polyphenols (English)

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

Ehsan Khafipour

4

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

author name string

Roberta De Nardi

1

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Giorgio Marchesini

2

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Shucong Li

3

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Kees J C Plaizier

5

1 reference

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8 March 2020

Matteo Gianesella

6

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Rebecca Ricci

7

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Igino Andrighetto

8

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

Severino Segato

9

1 reference

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8 March 2020

publication date

19 February 2016

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8 March 2020

BMC Veterinary Research

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

12

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

29

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Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

describes a project that uses

object named as

Phyloseq

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

object named as

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/s12917-016-0653-4

0 references

Indicators of induced subacute ruminal acidosis (SARA) in Danish Holstein cows

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Use of dicarboxylic acids and polyphenols to attenuate reticular pH drop and acute phase response in dairy heifers fed a high grain diet.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

High-throughput Methods Redefine the Rumen Microbiome and Its Relationship with Nutrition and Metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Impact of subacute ruminal acidosis (SARA) adaptation on rumen microbiota in dairy cattle using pyrosequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Effect of induced ruminal acidosis on blood variables in heifers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Composition and similarity of bovine rumen microbiota across individual animals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Interplay between rumen digestive disorders and diet-induced inflammation in dairy cattle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Invited review: Role of physically effective fiber and estimation of dietary fiber adequacy in high-producing dairy cattle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

PANDAseq: paired-end assembler for illumina sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

UCHIME improves sensitivity and speed of chimera detection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Impact of subacute ruminal acidosis (SARA) adaptation and recovery on the density and diversity of bacteria in the rumen of dairy cows.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Rumen microbial population dynamics during adaptation to a high-grain diet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Search and clustering orders of magnitude faster than BLAST

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Rumen bacterial diversity dynamics associated with changing from bermudagrass hay to grazed winter wheat diets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

PyNAST: a flexible tool for aligning sequences to a template alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Rumen microbiome composition determined using two nutritional models of subacute ruminal acidosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Distribution and biological activities of the flavonoid luteolin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Subacute ruminal acidosis in dairy cows: the physiological causes, incidence and consequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Ruminal acidosis in beef cattle: the current microbiological and nutritional outlook

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Invited review: Essential oils as modifiers of rumen microbial fermentation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Opportunities to improve fiber degradation in the rumen: microbiology, ecology, and genomics.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Methods for Dietary Fiber, Neutral Detergent Fiber, and Nonstarch Polysaccharides in Relation to Animal Nutrition

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

2 October 2017

Effects of partial mixed rations and supplement amounts on milk production and composition, ruminal fermentation, bacterial communities, and ruminal acidosis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

24 September 2018

Effects of the acid-tolerant engineered bacterial strain Megasphaera elsdenii H6F32 on ruminal pH and the lactic acid concentration of simulated rumen acidosis in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

24 September 2018

Microbial ecology of the rumen evaluated by 454 GS FLX pyrosequencing is affected by starch and oil supplementation of diets.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

24 September 2018

Population structure of rumen Escherichia coli associated with subacute ruminal acidosis (SARA) in dairy cattle.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

24 September 2018

A grain-based subacute ruminal acidosis challenge causes translocation of lipopolysaccharide and triggers inflammation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

24 September 2018

Effects of the dicarboxylic acids malate and fumarate on E. coli O157:H7 and Salmonella enterica typhimurium populations in pure culture and in mixed ruminal microorganism fermentations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

24 September 2018

Development of a real-time PCR assay for monitoring anaerobic fungal and cellulolytic bacterial populations within the rumen.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

24 September 2018

Manipulation of ruminal fermentation with organic acids: a review.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4759956

24 September 2018

PCR detection of Ruminococcus spp. in human and animal faecal samples

1 reference

https://pubmed.ncbi.nlm.nih.gov/26896166

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Effects of an extract of plant flavonoids (Bioflavex) on rumen fermentation and performance in heifers fed high-concentrate diets

1 reference

https://pubmed.ncbi.nlm.nih.gov/26896166

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phenotypic Characterization of Polysaccharidases Produced by Four Prevotella Type Strains

1 reference

https://pubmed.ncbi.nlm.nih.gov/26896166

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Real-time PCR detection of the effects of protozoa on rumen bacteria in cattle

1 reference

https://pubmed.ncbi.nlm.nih.gov/26896166

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12917-016-0653-4

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

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Europe PubMed Central

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8 March 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26896166%20AND%20SRC:MED&resulttype=core&format=json

8 March 2020

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