(Q35940300)

English

Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

0 references

Helicobacter pylori

1 reference

based on heuristic

inferred from title

whole genome sequencing

1 reference

based on heuristic

inferred from title

10

object named as

Åsa Sjöling

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Intawat Nookaew

9

object named as

Intawat Nookaew

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

David Y. Graham

5

object named as

David Y Graham

1 reference

Europe PubMed Central

11 August 2017

PMC publication ID

author name string

Kaisa Thorell

1

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Shaghayegh Hosseini

2

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Reyna Victoria Palacios Palacios Gonzáles

3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Chatchai Chaotham

4

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Lawrence Paszat

6

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Linda Rabeneck

7

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Samuel B Lundin

8

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

publication date

29 February 2016

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

BMC Evolutionary Biology

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

16

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

53

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

describes a project that uses

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MUMmer

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

https://scigraph.springernature.com/pub.10.1186/s12862-016-0619-y

0 references

Dynamics of Lewis b binding and sequence variation of the babA adhesin gene during chronic Helicobacter pylori infection in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Expression, purification and X-ray crystallographic analysis of the Helicobacter pylori blood group antigen-binding adhesin BabA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Prokka: rapid prokaryotic genome annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

A role for the vacuolating cytotoxin, VacA, in colonization and Helicobacter pylori-induced metaplasia in the stomach.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

The Three-dimensional Structure of the Extracellular Adhesion Domain of the Sialic Acid-binding Adhesin SabA fromHelicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Comparative analysis of the full genome of Helicobacter pylori isolate Sahul64 identifies genes of high divergence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Genome Sequences of Three hpAfrica2 Strains of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Pathology of gastric cancer and its precursor lesions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

QUAST: quality assessment tool for genome assemblies

1 reference

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2 October 2017

BayesHammer: Bayesian clustering for error correction in single-cell sequencing

1 reference

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2 October 2017

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

snpTree--a web-server to identify and construct SNP trees from whole genome sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Epidemiology of Helicobacter pylori infection in six Latin American countries (SWOG Trial S0701)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Socioeconomic and nutritional factors account for the association of gastric cancer with Amerindian ancestry in a Latin American admixed population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Human gastric mucins differently regulate Helicobacter pylori proliferation, gene expression and interactions with host cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Genome-wide survey of mutual homologous recombination in a highly sexual bacterial species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Molecular epidemiology, population genetics, and pathogenic role of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Helicobacter pylori genotyping from American indigenous groups shows novel Amerindian vacA and cagA alleles and Asian, African and European admixture

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Helicobacter pylori genome evolution during human infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Phylogeographic origin of Helicobacter pylori is a determinant of gastric cancer risk

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Helicobacter pylori from Peruvian amerindians: traces of human migrations in strains from remote Amazon, and genome sequence of an Amerind strain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

A global overview of the genetic and functional diversity in the Helicobacter pylori cag pathogenicity island

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Helicobacter pylori: gastric cancer and beyond

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Prodigal: prokaryotic gene recognition and translation initiation site identification

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building

1 reference

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2 October 2017

FastTree: computing large minimum evolution trees with profiles instead of a distance matrix

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Failure to detect Helicobacter pylori DNA in drinking and environmental water in Dhaka, Bangladesh, using highly sensitive real-time PCR assays

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

The peopling of the Pacific from a bacterial perspective

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Velvet: algorithms for de novo short read assembly using de Bruijn graphs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

The pathogenesis of Helicobacter pylori-induced gastro-duodenal diseases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

An African origin for the intimate association between humans and Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a western type cag-pathogenicity island

1 reference

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2 October 2017

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1 reference

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2 October 2017

Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Protein database searches using compositionally adjusted substitution matrices

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Functional adaptation of BabA, the H. pylori ABO blood group antigen binding adhesin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Versatile and open software for comparing large genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Traces of human migrations in Helicobacter pylori populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Biological activity of the Helicobacter pylori virulence factor CagA is determined by variation in the tyrosine phosphorylation sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Helicobacter pylori SabA adhesin in persistent infection and chronic inflammation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Allelic Variation within Helicobacter pylori babA and babB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Comparative genomics of Helicobacter pylori: analysis of the outer membrane protein families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Tyrosine phosphorylation of the Helicobacter pylori CagA antigen after cag-driven host cell translocation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Helicobacter pylori adhesin binding fucosylated histo-blood group antigens revealed by retagging

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Attachment of Helicobacter pylori to human gastric epithelium mediated by blood group antigens

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Basic local alignment search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

2 October 2017

Comparative genomic analysis of Helicobacter pylori from Malaysia identifies three distinct lineages suggestive of differential evolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

11 July 2018

Mosaicism in vacuolating cytotoxin alleles of Helicobacter pylori. Association of specific vacA types with cytotoxin production and peptic ulceration

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

11 July 2018

Re-annotation of the genome sequence of Helicobacter pylori 26695.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

24 September 2018

Achieving self-sufficiency of red blood cells based on universal voluntary blood donation in Latin America. The case of Nicaragua.

1 reference

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24 September 2018

Clinical relevance of cagA and vacA gene polymorphisms in Helicobacter pylori isolates from Senegalese patients.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

24 September 2018

BabA-mediated adherence is a potentiator of the Helicobacter pylori type IV secretion system activity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

24 September 2018

Helicobacter pylori Sequences Reflect Past Human Migrations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

24 September 2018

Recombination and clonal groupings within Helicobacter pylori from different geographical regions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4770546

24 September 2018

Infection with Helicobacter pylori strains possessing cagA is associated with an increased risk of developing adenocarcinoma of the stomach

1 reference

https://pubmed.ncbi.nlm.nih.gov/26928576

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gastric carcinogenesis

1 reference

https://pubmed.ncbi.nlm.nih.gov/26928576

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A new Helicobacter pylori vacuolating cytotoxin determinant, the intermediate region, is associated with gastric cancer

1 reference

https://pubmed.ncbi.nlm.nih.gov/26928576

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pathogenesis of Helicobacter pylori infection

1 reference

https://pubmed.ncbi.nlm.nih.gov/26928576

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Re-annotation of the genome sequence of Helicobacter pylori 26695.

1 reference

https://pubmed.ncbi.nlm.nih.gov/26928576

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12862-016-0619-Y

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

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