(Q35955254)

English

Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease

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scholarly article

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Europe PubMed Central

PMC publication ID

11 August 2017

Comparative genomic analysis of toxin-negative strains of Clostridium difficile from humans and animals with symptoms of gastrointestinal disease (English)

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Clostridium difficile

0 references

gastrointestinal system disease

1 reference

based on heuristic

inferred from title

Piklu Roy Chowdhury

object named as

Piklu Roy Chowdhury

1

0 references

Toni A. Chapman

object named as

Toni Chapman

3

0 references

Matthew Z DeMaere

object named as

Matthew DeMaere

2

0 references

Aaron Earl Darling

object named as

Aaron E Darling

6

0 references

Steven P Djordjevic

object named as

Steven P Djordjevic

7

0 references

author name string

Paul Worden

4

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Ian G Charles

5

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

12 March 2016

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

BMC Microbiology

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

16

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

41

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Clostridium difficile: New Insights into the Evolution of the Pathogenicity Locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Prevalence and pathogenicity of binary toxin-positive Clostridium difficile strains that do not produce toxins A and B

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Molecular methods for detecting and typing of Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Burden of Clostridium difficile infection in the United States

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Potential sources of Clostridium difficile in human infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

The flagellin FliC of Clostridium difficile is responsible for pleiotropic gene regulation during in vivo infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Automated reconstruction of whole-genome phylogenies from short-sequence reads

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Functional genomics reveals that Clostridium difficile Spo0A coordinates sporulation, virulence and metabolism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

The genome of Clostridium difficile 5.3.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Characterization of temperate phages infecting Clostridium difficile isolates of human and animal origins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Evolutionary history of the Clostridium difficile pathogenicity locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Identification of a novel zinc metalloprotease through a global analysis of Clostridium difficile extracellular proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Surface-layer protein A (SlpA) is a major contributor to host-cell adherence of Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Clostridium difficile binary toxin CDT: mechanism, epidemiology, and potential clinical importance

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Horizontal gene transfer converts non-toxigenic Clostridium difficile strains into toxin producers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

The role of flagella in Clostridium difficile pathogenesis: comparison between a non-epidemic and an epidemic strain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Risk factors of fecal toxigenic or non-toxigenic Clostridium difficile colonization: impact of Toll-like receptor polymorphisms and prior antibiotic exposure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Detection of mixed populations of Clostridium difficile from symptomatic patients using capillary-based polymerase chain reaction ribotyping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

A clinical and epidemiological review of non-toxigenic Clostridium difficile.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Susceptibility of hamsters to Clostridium difficile isolates of differing toxinotype.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Clostridium difficile ribotype diversity at six health care institutions in the United States

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Characterisation of Clostridium difficile biofilm formation, a role for Spo0A.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Clostridium difficile ribotype does not predict severe infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

The continually evolving Clostridium difficile species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Evaluation of an oral suspension of VP20621, spores of nontoxigenic Clostridium difficile strain M3, in healthy subjects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Clostridium difficile infection in the community: a zoonotic disease?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Macro and micro diversity of Clostridium difficile isolates from diverse sources and geographical locations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Outcomes in community-acquired Clostridium difficile infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Small but sufficient: the Rhodococcus phage RRH1 has the smallest known Siphoviridae genome at 14.2 kilobases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Binary toxin and death after Clostridium difficile infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

PHAST: a fast phage search tool

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Clinical Clostridium difficile: clonality and pathogenicity locus diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Evaluating ortholog prediction algorithms in a yeast model clade

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Easyfig: a genome comparison visualizer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Adaptive seeds tame genomic sequence comparison

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Parameters for accurate genome alignment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Incorporating sequence quality data into alignment improves DNA read mapping

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Multilocus sequence typing of Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Clostridium difficile infection: new developments in epidemiology and pathogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Reordering contigs of draft genomes using the Mauve aligner

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

The Sequence Alignment/Map format and SAMtools

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

A rapid bootstrap algorithm for the RAxML Web servers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

The RAST Server: rapid annotations using subsystems technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Increase in Clostridium difficile-related mortality rates, United States, 1999-2004.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Analyzing patterns of microbial evolution using the mauve genome alignment system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Clostridium difficile: an important pathogen of food animals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Clostridium difficile toxins: mechanism of action and role in disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Multiplex PCR targeting tpi (triose phosphate isomerase), tcdA (Toxin A), and tcdB (Toxin B) genes for toxigenic culture of Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Multilocus sequence typing analysis of human and animal Clostridium difficile isolates of various toxigenic types

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

How to detect Clostridium difficile variant strains in a routine laboratory

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Comparison of toxinotyping and PCR ribotyping of Clostridium difficile strains and description of novel toxinotypes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Transcription analysis of the genes tcdA-E of the pathogenicity locus of Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

Definition of the single integration site of the pathogenicity locus in Clostridium difficile.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

2 October 2017

The Clostridium difficile spo0A gene is a persistence and transmission factor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

27 July 2018

Genome analysis of the Clostridium difficile phage PhiCD6356, a temperate phage of the Siphoviridae family

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

27 July 2018

PhyloSift: phylogenetic analysis of genomes and metagenomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Nontoxigenic Clostridium difficile protects hamsters against challenge with historic and epidemic strains of toxigenic BI/NAP1/027 C. difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Fecal transplantation for the treatment of recurrent clostridium difficile infection

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Multiple factors modulate biofilm formation by the anaerobic pathogen Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Clostridium difficile carriage in healthy infants in the community: a potential reservoir for pathogenic strains.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Clostridium difficile PCR ribotype 078: an emerging strain in humans and in pigs?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

The complete genome sequence of Clostridium difficile phage phiC2 and comparisons to phiCD119 and inducible prophages of CD630.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Binary toxin-producing, large clostridial toxin-negative Clostridium difficile strains are enterotoxic but do not cause disease in hamsters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Multilocus sequence analysis and comparative evolution of virulence-associated genes and housekeeping genes of Clostridium difficile

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Colonization for the prevention of Clostridium difficile disease in hamsters

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

GroEL (Hsp60) of Clostridium difficile is involved in cell adherence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4789261

24 September 2018

Fast unfolding of communities in large networks

1 reference

https://api.crossref.org/works/10.1186%2FS12866-016-0653-3

21 January 2018

Effect of phage infection on toxin production by Clostridium difficile

1 reference

https://pubmed.ncbi.nlm.nih.gov/26971047

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Treatment of relapsing Clostridium difficile diarrhoea by administration of a non-toxigenic strain

1 reference

https://pubmed.ncbi.nlm.nih.gov/26971047

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Clinical features of Clostridium difficile-associated diarrhoea due to binary toxin (actin-specific ADP-ribosyltransferase)-producing strains

1 reference

https://pubmed.ncbi.nlm.nih.gov/26971047

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Clostridium difficile toxin expression is inhibited by the novel regulator TcdC

1 reference

https://pubmed.ncbi.nlm.nih.gov/26971047

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Bad bugs, no drugs: no ESCAPE revisited

1 reference

https://pubmed.ncbi.nlm.nih.gov/26971047

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Antagonism of toxigenic Clostridium difficile by nontoxigenic C. difficile

1 reference

https://pubmed.ncbi.nlm.nih.gov/26971047

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Design and evaluation of a multiplex polymerase chain reaction assay for the simultaneous identification of genes for nine different virulence factors associated with Escherichia coli that cause diarrhea and edema disease in swine

1 reference

https://pubmed.ncbi.nlm.nih.gov/26971047

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/S12866-016-0653-3

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

11 August 2017

ResearchGate publication ID

0 references

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