(Q35957928)

11 August 2017

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus (English)

1 reference

11 August 2017

0 references

57

Eric S Lander

0 references

B. Jesse Shapiro

2

B Jesse Shapiro

1 reference

11 August 2017

58

Stephan Günther

0 references

Nisha Broodie

Nisha Broodie

47

0 references

Luis Branco

Luis M Branco

14

0 references

Danny Milner

Danny A Milner

45

0 references

Pardis C. Sabeti

72

Pardis C Sabeti

0 references

Robert F. Garry

71

Robert F Garry

1 reference

11 August 2017

70

Christian T Happi

1 reference

11 August 2017

11

Mambu Momoh

1 reference

11 August 2017

1

Kristian G Andersen

1 reference

11 August 2017

62

Stephen F Schaffner

1 reference

11 August 2017

46

Amanda K Lukens

1 reference

11 August 2017

59

Lisa Hensley

1 reference

11 August 2017

8

Augustine Goba

1 reference

11 August 2017

68

Andreas Gnirke

1 reference

11 August 2017

3

Christian B Matranga

1 reference

11 August 2017

51

John S Schieffelin

1 reference

11 August 2017

13

Sarah Winnicki

1 reference

11 August 2017

56

Joseph B McCormick

1 reference

11 August 2017

54

Daniel G Bausch

1 reference

11 August 2017

63

Peter O Okokhere

1 reference

11 August 2017

67

Danny A Asogun

1 reference

11 August 2017

23

Lansana Kanneh

1 reference

11 August 2017

5

Aaron E Lin

1 reference

11 August 2017

6

Lina M Moses

1 reference

11 August 2017

30

Matthew Stremlau

1 reference

11 August 2017

35

Bruce Birren

1 reference

11 August 2017

52

Danielle Levy

1 reference

11 August 2017

20

Mohammed Fullah

1 reference

11 August 2017

22

Mbalu Fonnie

1 reference

11 August 2017

21

Richard Fonnie

1 reference

11 August 2017

15

Stephen K Gire

1 reference

11 August 2017

33

Shervin Tabrizi

1 reference

11 August 2017

17

Ridhi Tariyal

1 reference

11 August 2017

7

Onikepe A Folarin

1 reference

11 August 2017

64

S Humarr Khan

1 reference

11 August 2017

25

Michael Gbakie

1 reference

11 August 2017

4

Rachel Sealfon

1 reference

11 August 2017

24

Simbirie Jalloh

1 reference

11 August 2017

26

Sidiki Saffa

1 reference

Viral Hemorrhagic Fever Consortium

11 August 2017

61

Viral Hemorrhagic Fever Consortium

1 reference

11 August 2017

60

Sylvanus Okogbenin

1 reference

11 August 2017

Ikponmwonsa Odia

9

1 reference

11 August 2017

Philomena E Ehiane

10

1 reference

11 August 2017

Eleina M England

12

1 reference

11 August 2017

Eric Phelan

16

1 reference

11 August 2017

Ryan Tewhey

18

1 reference

11 August 2017

Omowunmi Omoniwa

19

1 reference

11 August 2017

Kandeh Karbo

27

1 reference

11 August 2017

Adrianne D Gladden

28

1 reference

11 August 2017

James Qu

29

1 reference

11 August 2017

Mahan Nekoui

31

1 reference

11 August 2017

Hilary K Finucane

32

1 reference

11 August 2017

Joseph J Vitti

34

1 reference

11 August 2017

Michael Fitzgerald

36

1 reference

11 August 2017

Caryn McCowan

37

1 reference

11 August 2017

Andrea Ireland

38

1 reference

11 August 2017

Aaron M Berlin

39

1 reference

11 August 2017

James Bochicchio

40

1 reference

11 August 2017

Barbara Tazon-Vega

41

1 reference

11 August 2017

Niall J Lennon

42

1 reference

11 August 2017

Elizabeth M Ryan

43

1 reference

11 August 2017

Zach Bjornson

44

1 reference

11 August 2017

Megan Rowland

48

1 reference

11 August 2017

Megan Heinrich

49

1 reference

11 August 2017

Marjan Akdag

50

1 reference

11 August 2017

Henry Akpan

53

1 reference

11 August 2017

Kathleen Rubins

55

1 reference

11 August 2017

Donald S Grant

65

1 reference

11 August 2017

George O Akpede

66

1 reference

11 August 2017

Joshua Z Levin

69

1 reference

11 August 2017

language of work or name

English

0 references

publication date

1 August 2015

1 reference

11 August 2017

13

0 references

published in

Cell

1 reference

11 August 2017

162

1 reference

11 August 2017

4

1 reference

11 August 2017

738-750

1 reference

Widespread recombination, reassortment, and transmission of unbalanced compound viral genotypes in natural arenavirus infections

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Using modelling to disentangle the relative contributions of zoonotic and anthroponotic transmission: the case of lassa fever

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

RNA virus attenuation by codon pair deoptimisation is an artefact of increases in CpG/UpA dinucleotide frequencies.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Strategies for containing Ebola in West Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Ebola virus disease in West Africa--the first 9 months of the epidemic and forward projections

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genomic surveillance elucidates Ebola virus origin and transmission during the 2014 outbreak

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Clock Rooting Further Demonstrates that Guinea 2014 EBOV is a Member of the Zaïre Lineage

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Phylogenetic Analysis of Guinea 2014 EBOV Ebolavirus Outbreak

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Emergence of Zaire Ebola Virus Disease in Guinea

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Lassa fever in post-conflict sierra leone

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genome-wide analysis of codon usage and influencing factors in chikungunya viruses

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

A case for the ancient origin of coronaviruses

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The changing face of pathogen discovery and surveillance

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Molecular evolution of viruses of the family Filoviridae based on 97 whole-genome sequences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Codon usage determines the mutational robustness, evolutionary capacity, and virulence of an RNA virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Epidemiology. Emerging disease or diagnosis?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Pathogenesis of the viral hemorrhagic fevers

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genome-wide patterns of intrahuman dengue virus diversity reveal associations with viral phylogenetic clade and interhost diversity

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The impact of human conflict on the genetics of Mastomys natalensis and Lassa virus in West Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Bayesian phylogenetics with BEAUti and the BEAST 1.7

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genome-wide scans provide evidence for positive selection of genes implicated in Lassa fever

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Purifying selection can obscure the ancient age of viral lineages

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The genomic rate of molecular adaptation of the human influenza A virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Synonymous but not the same: the causes and consequences of codon bias

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Filoviruses are ancient and integrated into mammalian genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Viral adaptation to host: a proteome-based analysis of codon usage and amino acid preferences

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Looking for Darwin's footprints in the microbial world

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Early and strong immune responses are associated with control of viral replication and recovery in lassa virus-infected cynomolgus monkeys

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Risk maps of Lassa fever in West Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

2 October 2017

Selection on Codon Bias

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Predicting linear B-cell epitopes using string kernels

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

BEAST: Bayesian evolutionary analysis by sampling trees

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Large-scale validation of methods for cytotoxic T-lymphocyte epitope prediction

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The quest for natural selection in the age of comparative genomics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Mastomys natalensis and Lassa fever, West Africa

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Comparisons of dN/dS are time dependent for closely related bacterial genomes

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Sequence analysis of L RNA of Lassa virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Patterns of Intra- and Interhost Nonsynonymous Variation Reveal Strong Purifying Selection in Dengue Virus

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Evidence for diversifying selection on erythrocyte-binding antigens of Plasmodium falciparum and P. vivax

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Genetic diversity among Lassa virus strains

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Completion of the Lassa fever virus sequence and identification of a RING finger open reading frame at the L RNA 5' End.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

An outbreak of Lassa fever on the Jos plateau, Nigeria, in January-February 1970. A preliminary report

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Lassa fever, a new virus disease of man from West Africa. I. Clinical description and pathological findings

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Lassa fever. Effective therapy with ribavirin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Adaptive protein evolution at the Adh locus in Drosophila

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Ebola haemorrhagic fever in Zaire, 1976

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

The excess of transitions among nucleotide substitutions: new methods of estimating transition bias underscore its significance

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

Generation of reassortants between African arenaviruses

24 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4537774

24 September 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/26276630

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2015.07.020

1 reference

11 August 2017

1 reference

11 August 2017

PubMed publication ID

26276630

1 reference