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DiMeX: A Text Mining System for Mutation-Disease Association Extraction.
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scholarly article
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
title
DiMeX: A Text Mining System for Mutation-Disease Association Extraction
(English)
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
main subject
text mining
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author
Raja Mazumder
series ordinal
3
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
author name string
A S M Ashique Mahmood
series ordinal
1
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
Tsung-Jung Wu
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2
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
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1 April 2020
K Vijay-Shanker
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4
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PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
language of work or name
English
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publication date
13 April 2016
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
published in
PLOS One
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
volume
11
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
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1 April 2020
issue
4
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
page(s)
e0152725
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Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
copyright license
Creative Commons Attribution 4.0 International
start time
13 April 2016
1 reference
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April 2022 Public Data File from Crossref
copyright status
copyrighted
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cites work
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830514
retrieved
2 October 2017
Hybrid curation of gene-mutation relations combining automated extraction and crowdsourcing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830514
retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
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reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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Annotating the biomedical literature for the human variome.
1 reference
stated in
PubMed Central
reference URL
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retrieved
2 October 2017
tmVar: a text mining approach for extracting sequence variants in biomedical literature
1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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Automated extraction and semantic analysis of mutation impacts from the biomedical literature
1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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Bioinformatics for personal genome interpretation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830514
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830514
retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830514
retrieved
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The impact of next-generation sequencing on genomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830514
retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4830514
retrieved
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HGVbaseG2P: a central genetic association database
1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
PubMed Central
reference URL
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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1 reference
stated in
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1 reference
stated in
PubMed Central
reference URL
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retrieved
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stated in
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1 reference
stated in
PubMed Central
reference URL
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stated in
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1 reference
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retrieved
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Identifiers
DOI
10.1371/JOURNAL.PONE.0152725
1 reference
stated in
Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
ADS bibcode
2016PLoSO..1152725M
0 references
PMC publication ID
4830514
1 reference
stated in
Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
PubMed publication ID
27073839
1 reference
stated in
Europe PubMed Central
PMC publication ID
4830514
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27073839%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 April 2020
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