(Q36024304)

11 August 2017

Dehydration-driven solvent exposure of hydrophobic surfaces as a driving force in peptide folding (English)

1 reference

11 August 2017

1 reference

Isabella Daidone

1

1 reference

11 August 2017

Martin B Ulmschneider

2

1 reference

11 August 2017

Alfredo Di Nola

3

1 reference

11 August 2017

Andrea Amadei

4

1 reference

11 August 2017

Jeremy C Smith

5

1 reference

11 August 2017

language of work or name

English

0 references

publication date

19 September 2007

1 reference

11 August 2017

6

1 reference

Proceedings of the National Academy of Sciences of the United States of America

inferred from page(s)

published in

1 reference

11 August 2017

104

1 reference

11 August 2017

39

1 reference

11 August 2017

15230-15235

1 reference

The origin of long-range attraction between hydrophobes in water

11 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Monte Carlo vs molecular dynamics for all-atom polypeptide folding simulations

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Folding and aggregation kinetics of a beta-hairpin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Interfaces and the driving force of hydrophobic assembly

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Hydrophobic hydration from small to large lengthscales: Understanding and manipulating the crossover.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Comparative study of generalized Born models: protein dynamics

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

The protein folding 'speed limit'.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Trp zipper folding kinetics by molecular dynamics and temperature-jump spectroscopy.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Polypeptide folding using Monte Carlo sampling, concerted rotation, and continuum solvation

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Infrared study of the stability and folding kinetics of a 15-residue beta-hairpin

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Simulation of the folding equilibrium of α-helical peptides: A comparison of the generalized Born approximation with explicit solvent

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Dewetting-induced collapse of hydrophobic particles

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Some factors in the interpretation of protein denaturation

2 October 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

2 October 2017

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Understanding folding and design: replica-exchange simulations of "Trp-cage" miniproteins

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Can a continuum solvent model reproduce the free energy landscape of a beta -hairpin folding in water?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Drying-induced hydrophobic polymer collapse

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Molecular segregation observed in a concentrated alcohol-water solution.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Is the first hydration shell of lysozyme of higher density than bulk water?

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

An information theory model of hydrophobic interactions

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Quantification of the hydrophobic interaction by simulations of the aggregation of small hydrophobic solutes in water

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Generalized born models of macromolecular solvation effects

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Temperature and length scale dependence of hydrophobic effects and their possible implications for protein folding.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Explicit and implicit water simulations of a beta-hairpin peptide

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation model.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Differences in hydration structure near hydrophobic and hydrophilic amino acids

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Essential dynamics of proteins

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Dominant forces in protein folding

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Reconciling the magnitude of the microscopic and macroscopic hydrophobic effects

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

The hydrophobic effect and the organization of living matter

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

An extended sampling of the configurational space of HPr from E. coli.

2 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Hydrophobic bonding and accessible surface area in proteins

11 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model

11 July 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Beta-hairpin conformation of fibrillogenic peptides: structure and alpha-beta transition mechanism revealed by molecular dynamics simulations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Thermodynamic and kinetic characterization of a beta-hairpin peptide in solution: an extended phase space sampling by molecular dynamics simulations in explicit water.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Theoretical characterization of alpha-helix and beta-hairpin folding kinetics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Prion protein peptides induce alpha-helix to beta-sheet conformational transitions

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

The missing term in effective pair potentials

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Kinetics of the coil-to-helix transition on a rough energy landscape.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

23 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Semianalytical treatment of solvation for molecular mechanics and dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Polypeptide chain folding in the hydrophobic core of hamster scrapie prion: analysis by X-ray diffraction

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2000556

New perspectives on hydrophobic effects

21 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Conformational Diffusion and Helix Formation Kinetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Surface topography dependence of biomolecular hydrophobic hydration

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0701401104

Effect of environment on hydrogen bond dynamics in liquid water

21 January 2018

1 reference

12 December 2020

Solvent structure at a hydrophobic protein surface

1 reference

12 December 2020

Large-amplitude nonlinear motions in proteins

1 reference

12 December 2020

How water meets a hydrophobic surface

1 reference

12 December 2020

Hydration of methanol in aqueous solution

1 reference

12 December 2020

Nanosecond folding dynamics of a three-stranded beta-sheet

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0701401104

1 reference

11 August 2017

0 references

1 reference

11 August 2017

PubMed publication ID

17881585

1 reference